CuGenDBv2

Gene ID	CmaCh04G007540
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Small nuclear ribonucleoprotein Sm D2
Genome location	Cma_Chr04:3843134..3846308
RNA-Seq Expression	CmaCh04G007540
Synteny	CmaCh04G007540
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0008380 - RNA splicing (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0030532 - small nuclear ribonucleoprotein complex (cellular component)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027248 - Small nuclear ribonucleoprotein Sm D2

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3952231.1 hypothetical protein CMV_022197 [Castanea mollissima]

2.1e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_003630987.1 small nuclear ribonucleoprotein Sm D2 [Medicago truncatula]

2.1e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_014494508.1 small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata]

2.1e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_020538459.1 small nuclear ribonucleoprotein Sm D2 isoform X4 [Jatropha curcas]

2.1e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_030543269.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea]

2.1e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0B2Q033 Small nuclear ribonucleoprotein Sm D2

1.0e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D2

1.0e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A5N5KBI5 Small nuclear ribonucleoprotein Sm D2

1.0e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A6A4QKF7 Small nuclear ribonucleoprotein Sm D2

1.0e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

G7LBH6 Small nuclear ribonucleoprotein Sm D2

1.0e-38

100

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

SwissProt top hits

e value

%identity

Alignment

P62316 Small nuclear ribonucleoprotein Sm D2

3.1e-37

91.14

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Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D2

3.1e-37

91.14

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Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D2

3.1e-37

91.14

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Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q54NC5 Probable small nuclear ribonucleoprotein Sm D2

2.2e-35

87.65

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+P+NKDRFISKMFLRGDSVI+VL+NP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D2

4.1e-37

91.14

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Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G47640.1 Small nuclear ribonucleoprotein family protein

6.3e-41

96.34

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein

6.3e-41

96.34

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein

6.3e-41

96.34

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein

6.3e-41

96.34

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT3G62840.1 Small nuclear ribonucleoprotein family protein

6.3e-41

96.34

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Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

Sequences

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CDS sequence

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ATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTGAGGGCCTTTGATCGGCATTGTAATATGGTTCTGGAAAA
TGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTG
TCATCATTGTTCTTAGGAATCCCAAGTAA

mRNA sequence

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ATGCACAAAACCGCGCCCTCGCCCTCTCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTTATCGCCACTTCGCCGCCGACCTCGCCCTCGCCCTCGCCTTCTCCTT
TGGTCTTCTCCGGCTCTGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTT
CAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTGAGGGCCTTTGATCGGCATTGTAATATGGTT
CTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGG
AGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTCCGCCATCTCATAATATGTTAAGTTTGAATCCTTGAGTTGACTCCATATGCCTGCCGATCTTATTT
CTTGTCGTCCTTCCTGTGATAAACATCAAACTTTCAGTTGATAGCCTGACCTTCTGCCAAGTTTGGAGCTATCTTATCAGTTTGTAGTTCATTTTAATTTTTCTTCTTCT
GCAAACCATTTCCCAGATACTGCAACTCTAGAAAGTGTATCTGTTTAGATATCAGAGAATATTTAGTAGAAATGCTATCTGTTTTTAACGTGTCTATTGATTAGAGACTT
TGAGTGTCTTTGCAACATGGGACATTTATTTGTTCTGATCAGCAAGTAATATTATCATTCAGAACTATGAGGATCTTTTGGGCTAGGCAGGTATGTGCTGTTCCTCGAGT
CTTGGTCCTTGTTGCTTCTGTTCATGTGTACACACCAAGGAATCAAATTTTCATTGACATGTGAATAGTTTTCTGTGTTTATAAATCGAAGGGTCTGACAATCATAGTTG
CTTA

Protein sequence

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MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

CmaCh04G007540 (gene) of Cucurbita maxima (Rimu) v1.1 genome