; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G008640 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G008640
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description1-deoxy-D-xylulose-5-phosphate synthase
Genome locationCma_Chr04:4432800..4433303
RNA-Seq ExpressionCmaCh04G008640
SyntenyCmaCh04G008640
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0016114 - terpenoid biosynthetic process (biological process)
GO:0052865 - 1-deoxy-D-xylulose 5-phosphate biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005477 - Deoxyxylulose-5-phosphate synthase
IPR029061 - Thiamin diphosphate-binding fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060415.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2 [Cucumis melo var. makuwa]2.0e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

XP_008450188.1 PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo]2.0e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

XP_022985020.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita maxima]4.5e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQTSGLAGFPKRDESVHDAFGAGHSSTSISA LGMAV R+LLGKKN+VISVIGD AMTAGQAYEAMNNAGY+D NMIIILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

XP_031737834.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis sativus]2.0e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

XP_038903478.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Benincasa hispida]2.6e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQTSGLAGFPKRDESVHDAFG GHSSTSISA LGMAVAR+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

TrEMBL top hitse value%identityAlignment
A0A0A0L869 1-deoxy-D-xylulose-5-phosphate synthase9.8e-3890.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

A0A1S3BNQ5 1-deoxy-D-xylulose-5-phosphate synthase9.8e-3890.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

A0A5D3CJJ6 1-deoxy-D-xylulose-5-phosphate synthase9.8e-3890.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTAGQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

A0A6J1EUL0 1-deoxy-D-xylulose-5-phosphate synthase2.8e-3789.13Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQTSGLAGFPKRDESVHDAFGAGHSSTSISA LGMAV R+LLGKKN+VISVIGD AMTAGQAYEAMNNAGY+D NMII+LNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

A0A6J1JA65 1-deoxy-D-xylulose-5-phosphate synthase2.2e-3790.22Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQTSGLAGFPKRDESVHDAFGAGHSSTSISA LGMAV R+LLGKKN+VISVIGD AMTAGQAYEAMNNAGY+D NMIIILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

SwissProt top hitse value%identityAlignment
O22567 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic5.3e-3375Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQT+GL+GF KR ES +D+FG GHSST+ISAALGMAV R+L G KN+V++VIGD AMTAGQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic5.3e-3376.09Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        LRQT+GLAGF KR ES +D FG GHSST+ISA LGMAV R+L G+ N+VI+VIGD AMTAGQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

Q38854 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic3.1e-3375Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQT+GL+GF KR ES HD FG GHSST+ISA LGMAV R+L GK N+V++VIGD AMTAGQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

Q6NB76 1-deoxy-D-xylulose-5-phosphate synthase5.7e-2766.33Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPT--AMPCY
        LR   GL+GF KR ES HD FGAGHSSTSISA LGMAVA EL GKKN+VI+VIGD +++AG AYEAMNNAG M+  +I+ILNDNN    P   AM  Y
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPT--AMPCY

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic1.0e-3988.04Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTAGQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

Arabidopsis top hitse value%identityAlignment
AT3G21500.1 1-deoxy-D-xylulose 5-phosphate synthase 11.4e-3373.91Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQT+GL+G+ KR ES HD+FG GHSST++SA LGMAV R+L G  NSV+SVIGD AMTAGQAYEAMNNAGY+  NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 11.4e-3373.91Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQT+GL+G+ KR ES HD+FG GHSST++SA LGMAV R+L G  NSV+SVIGD AMTAGQAYEAMNNAGY+  NMI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

AT4G15560.1 Deoxyxylulose-5-phosphate synthase2.2e-3475Show/hide
Query:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA
        +RQT+GL+GF KR ES HD FG GHSST+ISA LGMAV R+L GK N+V++VIGD AMTAGQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Subjt:  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 32.0e-2259.04Show/hide
Query:  RQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDN
        RQ SG++G   R ES +D+FG GH   SISA LG+AVAR++ GK++ V++VI +  +TAGQAYEAM+NAGY+D NMI+ILND+
Subjt:  RQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDN

AT5G11380.2 1-deoxy-D-xylulose 5-phosphate synthase 32.0e-2259.04Show/hide
Query:  RQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDN
        RQ SG++G   R ES +D+FG GH   SISA LG+AVAR++ GK++ V++VI +  +TAGQAYEAM+NAGY+D NMI+ILND+
Subjt:  RQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGAGGCATATCCTCACAAAATTCTCACTGGAAGAAGGTCTAGAATGCATACTCTTAAGGCAAACCTCAGGGCTTGCTGGTTTTCCCAAAAGGGATGAG
AGTGTTCATGATGCTTTTGGTGCAGGACACAGTTCTACAAGCATATCAGCTGCTCTTGGTATGGCTGTTGCAAGAGAGCTTTTGGGAAAGAAGAACAGTGTCATT
TCTGTGATTGGTGATAGAGCTATGACAGCAGGTCAAGCGTACGAGGCGATGAATAATGCAGGCTATATGGATAAGAACATGATCATTATTCTCAACGACAACAAC
CAAGTCTCATTGCCAACCGCTATGCCCTGCTACTCCTGTTGGAGCACTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGAGGCATATCCTCACAAAATTCTCACTGGAAGAAGGTCTAGAATGCATACTCTTAAGGCAAACCTCAGGGCTTGCTGGTTTTCCCAAAAGGGATGAG
AGTGTTCATGATGCTTTTGGTGCAGGACACAGTTCTACAAGCATATCAGCTGCTCTTGGTATGGCTGTTGCAAGAGAGCTTTTGGGAAAGAAGAACAGTGTCATT
TCTGTGATTGGTGATAGAGCTATGACAGCAGGTCAAGCGTACGAGGCGATGAATAATGCAGGCTATATGGATAAGAACATGATCATTATTCTCAACGACAACAAC
CAAGTCTCATTGCCAACCGCTATGCCCTGCTACTCCTGTTGGAGCACTCAGTAG
Protein sequenceShow/hide protein sequence
MGMRHILTKFSLEEGLECILLRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNN
QVSLPTAMPCYSCWSTQ