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CmaCh04G008700 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G008700
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionVery-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Genome locationCma_Chr04:4470494..4473790
RNA-Seq ExpressionCmaCh04G008700
SyntenyCmaCh04G008700
Gene Ontology termsGO:0030148 - sphingolipid biosynthetic process (biological process)
GO:0030497 - fatty acid elongation (biological process)
GO:0042761 - very long-chain fatty acid biosynthetic process (biological process)
GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
GO:0018812 - 3-hydroxyacyl-CoA dehydratase activity (molecular function)
GO:0102158 - very-long-chain 3-hydroxyacyl-CoA dehydratase activity (molecular function)
GO:0102343 - 3-hydroxy-arachidoyl-CoA dehydratase activity (molecular function)
GO:0102344 - 3-hydroxy-behenoyl-CoA dehydratase activity (molecular function)
GO:0102345 - 3-hydroxy-lignoceroyl-CoA dehydratase activity (molecular function)
InterPro domainsIPR007482 - Protein-tyrosine phosphatase-like, PTPLA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600692.1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

XP_022942201.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]4.6e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

XP_022942935.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]4.6e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

XP_022985709.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Cucurbita maxima]3.5e-1593.18Show/hide
Query:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV
        +ESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYR ML+
Subjt:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV

XP_022993215.1 uncharacterized protein LOC111489300 [Cucurbita maxima]3.5e-1593.18Show/hide
Query:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV
        +ESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYR ML+
Subjt:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV

TrEMBL top hitse value%identityAlignment
A0A6J1FPK4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.2e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

A0A6J1IEF4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.2e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

A0A6J1IKY7 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase2.2e-1585.42Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN
        ++ESGKYSF MPN+WNFSFDYLYGAMLILA YVPGSPHMYR MLVQR+
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN

A0A6J1JE18 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase1.7e-1593.18Show/hide
Query:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV
        +ESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYR ML+
Subjt:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV

A0A6J1JXZ3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase1.7e-1593.18Show/hide
Query:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV
        +ESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYR ML+
Subjt:  EESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLV

SwissProt top hitse value%identityAlignment
Q2KIP8 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 22.2e-0444.68Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        + ++G YS S+PN++NFSFDY    +LI+  Y+P  P +Y  M+ QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

Q5ZEJ0 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B2.3e-0957.45Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ + KY   MPN+WNFSFD+ Y ++L LA YVPGSPHM+  ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

Q6Y1H2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 22.2e-0444.68Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        + ++G YS S+PN++NFSFDY    +LI+  Y+P  P +Y  M+ QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

Q7XSZ4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A4.6e-1059.57Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ S KY   MPN+WNFSFD+ Y ++L LA YVPGSPHM+  ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

Q8VZB2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 23.9e-0961.7Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

Arabidopsis top hitse value%identityAlignment
AT5G10480.1 Protein-tyrosine phosphatase-like, PTPLA2.8e-1061.7Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

AT5G10480.2 Protein-tyrosine phosphatase-like, PTPLA2.8e-1061.7Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR

AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA2.8e-1061.7Show/hide
Query:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR
        ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Subjt:  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCT
GTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCA
GGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTT
GAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTG
GTTAGATATGATCCACTCAAAAGCTTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCT
GTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCA
GGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTT
GAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTG
GTTAGATATGATCCACTCAAAAGCTTTTCTTGA
Protein sequenceShow/hide protein sequence
MTFRIYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRNVFHILFNHLILFYVMKEDGAV
EEVAAQITHKIRVGGILDKVEKPPNQRDQFRGNSLVRYDPLKSFS