; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G010080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G010080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S17, chloroplastic
Genome locationCma_Chr04:5223638..5225685
RNA-Seq ExpressionCmaCh04G010080
SyntenyCmaCh04G010080
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]6.8e-4791.74Show/hide
Query:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK
        FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ VSDK
Subjt:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK

Query:  GKVSAPSTT
          VSAPSTT
Subjt:  GKVSAPSTT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]1.0e-4791.07Show/hide
Query:  FRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVV
        FR FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIYEPPSQ+ Q V
Subjt:  FRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVV

Query:  SDKGKVSAPSTT
        SDK  VSAPSTT
Subjt:  SDKGKVSAPSTT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]6.8e-4791.74Show/hide
Query:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK
        FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ VSDK
Subjt:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK

Query:  GKVSAPSTT
          VSAPSTT
Subjt:  GKVSAPSTT

XP_022943007.1 uncharacterized protein LOC111447872 [Cucurbita moschata]7.3e-4999.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

XP_022989005.1 uncharacterized protein LOC111486195 [Cucurbita maxima]3.3e-49100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic6.2e-4694.17Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic3.3e-4791.74Show/hide
Query:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK
        FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ VSDK
Subjt:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK

Query:  GKVSAPSTT
          VSAPSTT
Subjt:  GKVSAPSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic3.3e-4791.74Show/hide
Query:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK
        FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ VSDK
Subjt:  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDK

Query:  GKVSAPSTT
          VSAPSTT
Subjt:  GKVSAPSTT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic3.5e-4999.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.6e-49100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A4XLS1 30S ribosomal protein S171.3e-1956.1Show/hide
Query:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR
        RG  K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +  +RPLSK KRW V +IL +A+
Subjt:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR

A7HM43 30S ribosomal protein S176.7e-2152.13Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKG
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK KRWVV  IL ++++ E P  E  +  + G
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKG

B1I1J7 30S ribosomal protein S173.0e-2161.45Show/hide
Query:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARI
        R   K   G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HKRW VAE+L +++I
Subjt:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARI

B9MKH2 30S ribosomal protein S171.3e-1957.32Show/hide
Query:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR
        RG  K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +  +RPLSK KRW V +IL +A+
Subjt:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR

Q8R7W3 30S ribosomal protein S173.3e-2058.02Show/hide
Query:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA
        RG+ K  +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK KRW + E+++KA
Subjt:  RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein1.4e-3470.87Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+K W+VAEI++KARIY P +     VS     S+ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

AT1G79850.1 ribosomal protein S179.9e-1233.59Show/hide
Query:  LSGLSFLNPTTHCTPPRRTPFLPDSFLNPRVCSSLELKRVVGVFFRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENN
        L  L   +P  H + P  +   P+SF N R+ + + + R              MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +N
Subjt:  LSGLSFLNPTTHCTPPRRTPFLPDSFLNPRVCSSLELKRVVGVFFRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENN

Query:  QCNIGDRVKLDPSRPLSKHKRWVVAEILRKA
        Q  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  QCNIGDRVKLDPSRPLSKHKRWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein9.2e-3479.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHK W+V+EI++KARIY P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEP

AT3G48930.1 Nucleic acid-binding, OB-fold-like protein3.4e-0434.57Show/hide
Query:  NLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL
        ++RG++  + G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD + +   RPLSK  R+ V +++
Subjt:  NLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein6.9e-0537.04Show/hide
Query:  NLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL
        ++RG++  + G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK  R+ V +++
Subjt:  NLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCACTGTCCTCAGCTCAGCTGCCCAACTGTTCCACCCATCTGGTTGTCTGGGCTCTCCTTTCTAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCC
GTTCCTGCCCGATAGTTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAGAGGGTTGTTGGGGTTTTTTTTAGGGGTTTTAATCTCAGGGGCAAGATGAAGCAGG
TAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTC
ATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAA
AGCACGAATTTACGAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCACTGTCCTCAGCTCAGCTGCCCAACTGTTCCACCCATCTGGTTGTCTGGGCTCTCCTTTCTAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCC
GTTCCTGCCCGATAGTTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAGAGGGTTGTTGGGGTTTTTTTTAGGGGTTTTAATCTCAGGGGCAAGATGAAGCAGG
TAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTC
ATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAA
AGCACGAATTTACGAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA
Protein sequenceShow/hide protein sequence
MARHCPQLSCPTVPPIWLSGLSFLNPTTHCTPPRRTPFLPDSFLNPRVCSSLELKRVVGVFFRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKF
MAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT