; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G010860 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G010860
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPeptide chain release factor 1 like
Genome locationCma_Chr04:5594664..5597168
RNA-Seq ExpressionCmaCh04G010860
SyntenyCmaCh04G010860
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600897.1 hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia]4.6e-7998.08Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEE+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQA VGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_022957582.1 uncharacterized protein LOC111458931 [Cucurbita moschata]5.5e-8098.72Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEE+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_022991950.1 uncharacterized protein LOC111488439 [Cucurbita maxima]8.5e-81100Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_023536449.1 uncharacterized protein LOC111797620 [Cucurbita pepo subsp. pepo]1.0e-7897.44Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVS SETPIPDTVRVISEPKKKNME++NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_023552657.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo]2.4e-5978.48Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKSLP AS LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME +NR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

TrEMBL top hitse value%identityAlignment
A0A0A0KM25 Uncharacterized protein5.6e-5474.84Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNM---EEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV
        MAKSLPS +  QQFAK+   SK PQS  PK KSRIR SPSETPI  +VRVISEP K      EE+NR PLADVVSDCVKRWFQDTLKEA AGD +MQVLV
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNM---EEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV

Query:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        GQMFCSGYGVPK+TKKGLAWI RASK QA V + SDRHPGYLATDSE S+RRVK+D++R
Subjt:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1FNN7 uncharacterized protein LOC1114471033.4e-5977.85Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKS P AS LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME +NR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1GZI5 uncharacterized protein LOC1114589312.7e-8098.72Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEE+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1JUC7 uncharacterized protein LOC1114884394.1e-81100Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1K2L5 uncharacterized protein LOC1114918262.9e-5879.08Show/hide
Query:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKSLP AS LQQFAK+ V SKKPQS  P+ K +IRVSP ETPI D+VRVISEP   KKNME +NR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVK
        QMFCSGYGVPKDT+KGLAWI+RASK QA V + SDRHPGYLATDSE S+RRVK
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)1.7e-2344.9Show/hide
Query:  MAKSLPSASHLQ-QFAKIAVF--SKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV
        M KS+P  + L+   A +A F  S KP        S  + S S T   +T R               VPL+ VVSDC KRWF+DTL+EA AG+  MQVL+
Subjt:  MAKSLPSASHLQ-QFAKIAVF--SKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV

Query:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSE
        GQM+ SGYGVPKD +KG  WI +AS+ ++ V +V D+ PGY A+DS+
Subjt:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSE

AT5G05360.1 unknown protein5.6e-3064.37Show/hide
Query:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRR
        NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++   +VSD+ PGY A+DS+ ++++
Subjt:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRR

AT5G05360.2 unknown protein5.7e-2769.33Show/hide
Query:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPG
        NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++   +VSD+ PG
Subjt:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAATCGCTTCCGTCGGCATCTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGT
TTCGCCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAATATGGAGGAGCAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACT
GCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGCGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGAC
ACTAAGAAGGGGCTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAA
TAGGAGAGTGAAACAAGATGACATCAGATGA
mRNA sequenceShow/hide mRNA sequence
CTTTTTCTGAATCCAAGAGAGAAGCGAGCCTACGATTTGCAGACGCAAAAAACTGGCGGTTTCCATCCGCGCAAATTCCCTTTGTTTGATGGCGAAATCGCTTCCGTCGG
CATCTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGTTTCGCCGTCCGAAACTCCGATT
CCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAATATGGAGGAGCAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTTCAGGA
CACGCTCAAGGAGGCCAGCGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGACACTAAGAAGGGGCTCGCTTGGA
TCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAATAGGAGAGTGAAACAAGATGAC
ATCAGATGATCCTTTCAGTAATCTGATTACAAATTTACAAGCAATGTTGAAGATGATGATAAATACGAAAGACAGAGGAAACCTTGTTTGGGTTGGTTTTGGGTCCTTTT
CTGCTTTTCCTTGGTAGGCTAACTTCATCTCTAAGTTAATACTTGCTGTACCTTTCTCCATTCCCATGGCTGCTCTGGGTTTGAAGAAGCCCACAACCCCAGCCCTTTTA
GCTCACTGTTATGAACAATAAATTATAGTCTTTCACACTGCAGATGCAACAGATCATGCATTTTGAGAAAAGAGTTTTGTGTCGAGTTTTCTGTGTGTTGTGGACATAGG
TGTGTTTCTCGCTATTAAGCGCAAACGTTGATGAGTGTAGATTAAACATTGAATTGATTTTGAATGATTAAAAATAATATTACTTGCCTT
Protein sequenceShow/hide protein sequence
MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKD
TKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR