; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G011180 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G011180
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein EARLY FLOWERING 4-like
Genome locationCma_Chr04:5782329..5782718
RNA-Seq ExpressionCmaCh04G011180
SyntenyCmaCh04G011180
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]1.3e-5086.05Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  HD FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFS+ F+NHK R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]4.0e-6097.67Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

XP_004149248.1 protein EARLY FLOWERING 4 [Cucumis sativus]7.6e-5186.05Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  H  FPDE DP+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFS+ F+NHK R GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]2.6e-5996.9Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFSSGFNN+KSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]1.5e-62100Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein3.7e-5186.05Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  H  FPDE DP+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFS+ F+NHK R GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

A0A1S3CIT1 uncharacterized protein LOC1035014406.2e-5186.05Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  HD FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFS+ F+NHK R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

A0A5A7SR92 Protein EARLY FLOWERING 46.2e-5186.05Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDD  HD FPDE D +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFS+ F+NHK R+GKRG++NPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

A0A6J1GYX8 protein EARLY FLOWERING 4-like1.3e-5996.9Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFSSGFNN+KSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

A0A6J1IH33 protein EARLY FLOWERING 4-like7.1e-63100Show/hide
Query:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
        YSDFSSDFSSGFNNHKSRNGKRGSSNPDA
Subjt:  YSDFSSDFSSGFNNHKSRNGKRGSSNPDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 41.1e-2369.05Show/hide
Query:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRG
        DP +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSSGF  H  +NG  G
Subjt:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRG

O80877 Protein ELF4-LIKE 11.0e-1348.84Show/hide
Query:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSS
        D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSS

Q570U6 Protein ELF4-LIKE 45.5e-1246.15Show/hide
Query:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 31.4e-1239.33Show/hide
Query:  ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS         +   G  N
Subjt:  ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSSN

Q94BS8 Protein ELF4-LIKE 22.3e-1041.25Show/hide
Query:  HDGFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 43.9e-1346.15Show/hide
Query:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 43.9e-1346.15Show/hide
Query:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 31.0e-1339.33Show/hide
Query:  ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS         +   G  N
Subjt:  ECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSSN

AT2G29950.1 ELF4-like 17.1e-1548.84Show/hide
Query:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSS
        D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)7.6e-2569.05Show/hide
Query:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRG
        DP +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSSGF  H  +NG  G
Subjt:  DPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAATCAACCACCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGA
CGAATGCGACCCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAATGAGAATCACCAGT
CTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCT
GGGTTCAATAACCACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAATCAACCACCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGCGACGACGGCCGACACGACGGCTTCCCTGA
CGAATGCGACCCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTCCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAATGAGAATCACCAGT
CTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCT
GGGTTCAATAACCACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGA
Protein sequenceShow/hide protein sequence
MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSS
GFNNHKSRNGKRGSSNPDA