; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G011940 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G011940
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL30
Genome locationCma_Chr04:6090339..6093203
RNA-Seq ExpressionCmaCh04G011940
SyntenyCmaCh04G011940
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601004.1 Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. sororia]5.9e-7065.8Show/hide
Query:  MLHIPDPILLYTPKGWKNQFFCGAKAPQGKLDRDGYEGWRQAAYPGPDGAFMKSLRKRATNLKEARVYLLIHCLEFCLVNDFVAYFLFELLICEYQESDR
        MLH PDPI+LYTPKGWKNQFFCGAKAPQGKLDRDGYEGWRQAAYP      +  L +   N  E +  L I                             
Subjt:  MLHIPDPILLYTPKGWKNQFFCGAKAPQGKLDRDGYEGWRQAAYPGPDGAFMKSLRKRATNLKEARVYLLIHCLEFCLVNDFVAYFLFELLICEYQESDR

Query:  GKNLSAHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYI
               FLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYI
Subjt:  GKNLSAHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYI

Query:  PKDYYTGGHIGLNF-------EVKQAQAPIN
        PKDYYTG   G  F       E  +AQ  +N
Subjt:  PKDYYTGGHIGLNF-------EVKQAQAPIN

KAG7031619.1 Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-5280.43Show/hide
Query:  EYQESDRGKNLSAHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFG
        EYQESDRG+ LSAHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGY       GGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFG
Subjt:  EYQESDRGKNLSAHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFG

Query:  LVRDVYIPKDYYTGGHIGLNF-------EVKQAQAPIN
        LVRDVYIPKDYYTG   G  F       E  +AQ  +N
Subjt:  LVRDVYIPKDYYTGGHIGLNF-------EVKQAQAPIN

XP_022987464.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima]1.2e-4183.93Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

XP_038892246.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida]1.2e-4183.93Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

XP_038892248.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida]1.2e-4183.93Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

TrEMBL top hitse value%identityAlignment
A0A0A0KNV5 RRM domain-containing protein1.4e-4083.19Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F    
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF----

Query:  ---EVKQAQAPIN
           E  +AQ  +N
Subjt:  ---EVKQAQAPIN

A0A1S3CFP8 serine/arginine-rich SC35-like splicing factor SCL302.6e-3981.25Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGY   GGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

A0A6J1CBL6 serine/arginine-rich SC35-like splicing factor SCL306.4e-3879.46Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGY   GGGGGGGGGYGRRREQ HGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYY+G   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

A0A6J1H0N2 serine/arginine-rich SC35-like splicing factor SCL301.7e-3879.46Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGY     GGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

A0A6J1JIZ1 serine/arginine-rich SC35-like splicing factor SCL305.6e-4283.93Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG   G  F     
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF-----

Query:  --EVKQAQAPIN
          E  +AQ  +N
Subjt:  --EVKQAQAPIN

SwissProt top hitse value%identityAlignment
Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL281.5e-0438Show/hide
Query:  RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R YS  P   SPP  R+GY        P  R +   G  G                LL+RN+P+D RP +LR  FERFG ++D+Y+P++YYTG   G  F
Subjt:  RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL302.8e-3073.74Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG       RR   HGSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G   G  F
Subjt:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A2.0e-1251.06Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R Y+P   SPP RGYG RGRSP  RG  GG            R      SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTG   G  F
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL331.2e-1252.13Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R Y+P   SPP RGYG RGRSP  RG  G           GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG   G  F
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 338.3e-1452.13Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R Y+P   SPP RGYG RGRSP  RG  G           GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG   G  F
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

AT1G55310.2 SC35-like splicing factor 338.3e-1452.13Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R Y+P   SPP RGYG RGRSP  RG  G           GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG   G  F
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

AT1G55310.3 SC35-like splicing factor 332.9e-1453.33Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHI
        R Y+P   SPP RGYG RGRSP  RG  G           GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG H+
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHI

AT3G13570.1 SC35-like splicing factor 30A1.4e-1351.06Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        R Y+P   SPP RGYG RGRSP  RG  GG            R      SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTG   G  F
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF

AT3G55460.1 SC35-like splicing factor 302.0e-3173.74Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF
        MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG       RR   HGSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G   G  F
Subjt:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHIGLNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATATACCCGACCCGATCCTTCTCTATACACCTAAAGGCTGGAAGAACCAATTTTTTTGTGGGGCGAAGGCACCTCAAGGAAAGCTTGATAGAGATGGA
TATGAAGGATGGAGGCAGGCAGCATATCCAGGTCCGGATGGTGCATTTATGAAATCTCTAAGAAAGAGAGCGACAAATCTGAAAGAGGCACGTGTTTACCTGCTT
ATCCACTGCCTGGAATTCTGCTTGGTAAATGATTTCGTTGCATATTTCCTTTTTGAACTTCTTATTTGTGAGTATCAGGAATCAGATCGAGGGAAAAATCTCTCT
GCGCATTTTCTTGTCTTCCCGCTCTTTTCTTCAGGTCGAAACATGAGAAGATACAGCCCACCATATCATAGCCCTCCAAGAAGAGGATATGGTGGTCGTGGAAGA
AGCCCCCCAGGAAGGGGTTATGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGCCTCATGGTAGCCTTTTGGTTAGAAAT
ATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGCGATGTGTATATTCCAAAGGACTATTACACAGGGGGGCATATT
GGTTTGAACTTTGAAGTTAAGCAAGCCCAAGCCCCTATAAATGAGGGTCTACTACTTTTCTCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATATACCCGACCCGATCCTTCTCTATACACCTAAAGGCTGGAAGAACCAATTTTTTTGTGGGGCGAAGGCACCTCAAGGAAAGCTTGATAGAGATGGA
TATGAAGGATGGAGGCAGGCAGCATATCCAGGTCCGGATGGTGCATTTATGAAATCTCTAAGAAAGAGAGCGACAAATCTGAAAGAGGCACGTGTTTACCTGCTT
ATCCACTGCCTGGAATTCTGCTTGGTAAATGATTTCGTTGCATATTTCCTTTTTGAACTTCTTATTTGTGAGTATCAGGAATCAGATCGAGGGAAAAATCTCTCT
GCGCATTTTCTTGTCTTCCCGCTCTTTTCTTCAGGTCGAAACATGAGAAGATACAGCCCACCATATCATAGCCCTCCAAGAAGAGGATATGGTGGTCGTGGAAGA
AGCCCCCCAGGAAGGGGTTATGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGCCTCATGGTAGCCTTTTGGTTAGAAAT
ATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGCGATGTGTATATTCCAAAGGACTATTACACAGGGGGGCATATT
GGTTTGAACTTTGAAGTTAAGCAAGCCCAAGCCCCTATAAATGAGGGTCTACTACTTTTCTCTGCCTAA
Protein sequenceShow/hide protein sequence
MLHIPDPILLYTPKGWKNQFFCGAKAPQGKLDRDGYEGWRQAAYPGPDGAFMKSLRKRATNLKEARVYLLIHCLEFCLVNDFVAYFLFELLICEYQESDRGKNLS
AHFLVFPLFSSGRNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGGHI
GLNFEVKQAQAPINEGLLLFSA