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CmaCh04G012260 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G012260
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionSerine/arginine-rich splicing factor RS2Z32
Genome locationCma_Chr04:6254625..6256472
RNA-Seq ExpressionCmaCh04G012260
SyntenyCmaCh04G012260
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGE46047.1 arginine/serine-rich splicing factor RS2Z39 transcript V [Zea mays]2.1e-1676.79Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIW
        MPRYDDRYGGTRLYVGRL++RTRSRDL+ LFGRYGRFFG  +  RS+V G PWW W
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIW
CBI32650.3 unnamed protein product, partial [Vitis vinifera]2.5e-1779.63Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWW
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRF G C TWRSMV G+ WW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWW
KAF4372419.1 hypothetical protein F8388_027092 [Cannabis sativa]6.7e-2385Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIWRVFL
        MPRYDDRYGGTRLYVGRL SR R RDL+DLF RYGRFFG CQTWRS+VRG  WWIWRVFL
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIWRVFL
KAG6601030.1 Serine/arginine-rich splicing factor RS2Z32, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3487.5Show/hide
Query:  MQSVQSTHKRDGFELKFYRRGKEIQKSVGNRGKSLEGFVFFPGAPPSNFLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
        MQSVQSTHKRDGFELKFYRRGKEI+KSVGNRGKSLEGFVF+P        DKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGR
Subjt:  MQSVQSTHKRDGFELKFYRRGKEIQKSVGNRGKSLEGFVFFPGAPPSNFLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
KAG6669979.1 hypothetical protein CIPAW_01G279300 [Carya illinoinensis]2.2e-1892Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRG
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRF G C TWRSMVRG
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRG
TrEMBL top hitse value%identityAlignment
A0A5A7SS39 Serine/arginine-rich splicing factor RS2Z32-like isoform X12.1e-1493.02Show/hide
Query:  PPSNFLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYG
        PP+ FLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYG
Subjt:  PPSNFLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYG
A0A7G2EX24 (thale cress) hypothetical protein1.6e-1474.51Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGF
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRF G+C TWR ++ G+
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGF
A0A7J6GY79 Uncharacterized protein3.2e-2385Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIWRVFL
        MPRYDDRYGGTRLYVGRL SR R RDL+DLF RYGRFFG CQTWRS+VRG  WWIWRVFL
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIWRVFL
D7TQD0 Uncharacterized protein1.2e-1779.63Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWW
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRF G C TWRSMV G+ WW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWW
M1HA94 Arginine/serine-rich splicing factor RS2Z39 transcript V1.0e-1676.79Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIW
        MPRYDDRYGGTRLYVGRL++RTRSRDL+ LFGRYGRFFG  +  RS+V G PWW W
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPWWIW
SwissProt top hitse value%identityAlignment
Q8VYA5 Serine/arginine-rich splicing factor RS2Z333.6e-1186.11Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
Q9FYB7 Serine/arginine-rich splicing factor RS2Z323.6e-1186.11Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
Arabidopsis top hitse value%identityAlignment
AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 332.5e-1286.11Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.5e-1286.11Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCAGTCCAAAGCACACATAAAAGGGATGGATTCGAACTGAAGTTTTATCGGAGAGGGAAAGAGATTCAGAAAAGCGTCGGAAACCGAGGGAAATCTTTG
GAAGGTTTCGTATTCTTTCCAGGTGCGCCTCCTTCGAATTTTCTAGACAAAATGCCAAGGTACGACGATCGTTATGGTGGTACTCGGCTCTACGTTGGGCGCCTG
TCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCGGTCGTTATGGAAGGTTTTTTGGCTTATGTCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGG
TGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATCAGTCCAAAGCACACATAAAAGGGATGGATTCGAACTGAAGTTTTATCGGAGAGGGAAAGAGATTCAGAAAAGCGTCGGAAACCGAGGGAAATCTTTG
GAAGGTTTCGTATTCTTTCCAGGTGCGCCTCCTTCGAATTTTCTAGACAAAATGCCAAGGTACGACGATCGTTATGGTGGTACTCGGCTCTACGTTGGGCGCCTG
TCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCGGTCGTTATGGAAGGTTTTTTGGCTTATGTCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGG
TGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAG
Protein sequenceShow/hide protein sequence
MQSVQSTHKRDGFELKFYRRGKEIQKSVGNRGKSLEGFVFFPGAPPSNFLDKMPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRFFGLCQTWRSMVRGFPW
WIWRVFLLCYCLFLWKCQESQNGV