CuGenDBv2

Gene ID	CmaCh04G012800
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	Cma_Chr04:6536741..6537274
RNA-Seq Expression	CmaCh04G012800
Synteny	CmaCh04G012800
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601079.1 hypothetical protein SDJN03_06312, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-84

96.61

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCS+TRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL +YHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

KAG7031885.1 hypothetical protein SDJN02_05926, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-84

97.18

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCS+TRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_022957590.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita moschata]

3.8e-85

98.31

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_022999561.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita maxima]

4.0e-87

100

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.9e-84

97.74

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCSI RGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

1.0e-72

85.08

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA
        MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+SSSV SLSS+VVNPFNCSI RGRR FSEV V+SDSGT SSA AVSAA TSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA

Query:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPL VYHVAKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

6.7e-72

83.98

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA
        MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+SSSV SLSSVVVNPFNCSI RGRR FSEV+V+SDSGT SSA AVSAA TSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA

Query:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPL VYHVAKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

6.7e-72

83.98

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Query:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA
        MI +ANSIG++P P P+    AAR ACSMTVFS++D +SS+SSSV SLSSVVVNPFNCSI RGRR FSEV+V+SDSGT SSA AVSAA TSLSE+ETDEA
Subjt:  MITMANSIGVIPTPAPT----AARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEA

Query:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPL VYHVAKLPEA+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

1.8e-85

98.31

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYS SVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAA TSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPL VYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

2.0e-87

100

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Query:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
        MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR
Subjt:  MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAAR

Query:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  IGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

9.2e-18

37.5

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Query:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR-RFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIG
        M   + V+ +    +   A +        F S  +SS +  S++       + TR R     EV +KSDS T       S++ +   EDE  +    ++G
Subjt:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR-RFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIG

Query:  ARVRVKVPLNVYHVAKLPEADL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
         +V+VK PL VYHV KLPE +L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  ARVRVKVPLNVYHVAKLPEADL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

6.0e-25

64.71

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Query:  DEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        + AAA +IG RVRV  PL VYHV K P+ D++GMEGV+K YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  DEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Q55781 Ferredoxin-thioredoxin reductase, variable chain

9.9e-04

37.33

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Query:  IGARVRVKVPLNVYH--VAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE
        +G RVRV   + VYH    K    DL+GMEG +   +  W+G+ +SANLP  V+F          +F AH + +E
Subjt:  IGARVRVKVPLNVYH--VAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEE

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

2.0e-28

44.32

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Query:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--------RFFSEVTVKSDSGTLSSAAAVSAAMTSLS---EDE
        M NS  + P     A RP  S     +     S   S++S SS +  P + S + GR        R   + T++ D    S+A+  + A  S S   E E
Subjt:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR--------RFFSEVTVKSDSGTLSSAAAVSAAMTSLS---EDE

Query:  TDEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
         DE A  +IGARVRV VPL VYHV ++PE +L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  TDEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

9.1e-29

42.39

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Query:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR------RFFSEVTVKSDSGTLSSAAAVSA----AMTSLSEDET
        M++ I + P  A    RP+    + +S    ++ +++  +L S +V P +   ++ +      R  S  T++ D   + SA +++A    + +  SE+E 
Subjt:  MANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGR------RFFSEVTVKSDSGTLSSAAAVSA----AMTSLSEDET

Query:  DEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        +  A A+IG+RVRV  PL VYHV ++PE DLEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+EFE++
Subjt:  DEAAAARIGARVRVKVPLNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCACTATGGCGAATAGTATCGGCGTGATACCAACGCCGGCGCCGACGGCCGCTCGTCCTGCCTGTTCTATGACGGTATTCTCTAGTACTGATTTCAAATCGTCCTA
TTCCTCGTCCGTGAGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTACAAGAGGGAGAAGATTCTTCAGCGAAGTTACAGTCAAATCAGATTCCGGTA
CTTTGTCTTCAGCTGCTGCTGTTTCGGCGGCGATGACGTCATTGTCGGAGGATGAGACGGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAGGTGCCT
TTGAATGTGTATCATGTTGCTAAGTTACCGGAGGCGGATCTTGAGGGGATGGAAGGAGTGCTGAAGGATTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGCTAATCT
TCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCGGTCAAATTCGTAGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

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Protein sequence

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MITMANSIGVIPTPAPTAARPACSMTVFSSTDFKSSYSSSVSSLSSVVVNPFNCSITRGRRFFSEVTVKSDSGTLSSAAAVSAAMTSLSEDETDEAAAARIGARVRVKVP
LNVYHVAKLPEADLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

CmaCh04G012800 (gene) of Cucurbita maxima (Rimu) v1.1 genome