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CmaCh04G014390 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G014390
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionribonuclease H2 subunit A-like isoform X2
Genome locationCma_Chr04:7336729..7339005
RNA-Seq ExpressionCmaCh04G014390
SyntenyCmaCh04G014390
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601228.1 Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia]6.0e-2291.53Show/hide
Query:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        YAIGSISE MIYGRLYCGRFYSKGNAEE REEPAMFL SQSP ELRGLV+WMTVDEAGR
Subjt:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
XP_022957463.1 uncharacterized protein LOC111458856 isoform X1 [Cucurbita moschata]1.4e-2393.22Show/hide
Query:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        YAIGSISEPMIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGR
Subjt:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
XP_022957464.1 ribonuclease H2 subunit A-like isoform X2 [Cucurbita moschata]2.4e-1892Show/hide
Query:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        MIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGR
Subjt:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
XP_022987954.1 uncharacterized protein LOC111485320 isoform X1 [Cucurbita maxima]1.4e-26100Show/hide
Query:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
Subjt:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
XP_022988037.1 ribonuclease H2 subunit A-like isoform X2 [Cucurbita maxima]2.3e-21100Show/hide
Query:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
Subjt:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
TrEMBL top hitse value%identityAlignment
A0A6J1H0A3 uncharacterized protein LOC111458856 isoform X17.0e-2493.22Show/hide
Query:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        YAIGSISEPMIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGR
Subjt:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
A0A6J1H207 ribonuclease H2 subunit A-like isoform X21.2e-1892Show/hide
Query:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        MIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGR
Subjt:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
A0A6J1JBZ7 ribonuclease H2 subunit A-like isoform X21.1e-21100Show/hide
Query:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
Subjt:  MIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
A0A6J1JK96 uncharacterized protein LOC111485320 isoform X16.7e-27100Show/hide
Query:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
        YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
Subjt:  YAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCAAATGCGCTTCAAGGCCTTGTGCAGTGGATCAGCACCAATGGAGCACTATGCAATCGGTTCGATCTCGGAGCCGATGATTTATGGACGCTTGTACTGC
GGGCGTTTCTATTCGAAAGGAAACGCCGAAGAACCGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAATGAGCTTCGAGGCCTTGTAAAATGGATG
ACTGTCGATGAAGCCGGTCGAACTCAAAAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCAAATGCGCTTCAAGGCCTTGTGCAGTGGATCAGCACCAATGGAGCACTATGCAATCGGTTCGATCTCGGAGCCGATGATTTATGGACGCTTGTACTGC
GGGCGTTTCTATTCGAAAGGAAACGCCGAAGAACCGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAATGAGCTTCGAGGCCTTGTAAAATGGATG
ACTGTCGATGAAGCCGGTCGAACTCAAAAACATTGAAAGAATAGAAGACAGAGGAATTGTTTGAAAATTTGAAGGCTAACGAATCAATTGGATGGGCTGCTGATG
TCAAAGATCCACGCGAGCTCTCACATCCAAAACGCTAAATAAGAAAGAAAGATCCAACAAGAAAGATGAAGCACACACCTCAATCAACAGATTAACAATGTTCTT
GTACGGAAGCAGCCTTGATATCAGAAAACTAAATGGAGATGAGCAATGGCGGCCAAAACTGAAGCTACCAGAAGCCCCATGTTGTTTTCATAGTGATTTCCTGCA
TTGCGCGGTCGACCTTGGCGATGATGTGCTTGTGCCGAACCAGCGGCATAAACAGGGATTACGGCCGCACCTCCGCCTCCTGCTTGAGGTCTACCGCCACCACCA
TTTTCTCCGCCACCGGCGGCACTTCCATGACCAATCCCTTGAGAAACGGTGATTGCCCTTGCACTGTATATGCTGCTAATCCGGTTAGTGACACCATCCTGGCCA
TGTTTTTCTGCATTAGTTTTCTGGTGGTAATTTGGCTCTGCATACATATAGAAACTGGCTTAGGAATGGGGGTATAATGAATTTCATTTTTAAAGCTTAAAAAAT
GTCACTGGAAAAAGAAGCGCACCCAACAGAATACACTGACGGTAGGAATTTAGTGGTAAGTTTCTTTTGGTGACCCTTTATTTCTTCGTGGGAAGTGTGTAGGAA
TATTCTATTCATGGCATGCACTTGTGAGGCACCAAAAATTCCCTCTTTTAAGTTTCTAATCTTGGATTTGATTTAAATCCCATTTTAATTTTAAACTATTTTAAA
TATTTAAAAAGGCGAC
Protein sequenceShow/hide protein sequence
MPQMRFKALCSGSAPMEHYAIGSISEPMIYGRLYCGRFYSKGNAEEPREEPAMFLWSQSPNELRGLVKWMTVDEAGRTQKH