CuGenDBv2

Gene ID	CmaCh04G016260
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	RRM domain-containing protein
Genome location	Cma_Chr04:8198677..8199986
RNA-Seq Expression	CmaCh04G016260
Synteny	CmaCh04G016260
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601405.1 hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-102

98.45

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

1.7e-102

98.45

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

6.8e-104

100

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

4.4e-103

98.97

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

1.6e-92

91.24

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS+H  TS AKRRR  PPA  P ED+D+DKPL KPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

1.4e-86

87.63

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

1.4e-86

87.63

Show/hide

Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

6.2e-87

85.57

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

8.1e-103

98.45

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

3.3e-104

100

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Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

4.5e-50

51.46

Show/hide

Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

3.2e-51

51.46

Show/hide

Query:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGT
GGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCA
TCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACC
ATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTT
GCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGG
GCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

mRNA sequence

Show/hide mRNA sequence

CGTGTAGGGGCTAAATTTGCAGAGGGCGGAGGTGAAATTGGGGCATAAGGCGCAGTTTCCTTGGCATCAACCATTCTCTGCCGCCGCTCCCCCGAGAAGCGATGGGTCGA
AAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCC
CTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCATCTCCCGCA
TCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACCATTGATTCC
AAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGA
AGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAG
TTGTTGCTTACGATGATATTCTCTAAGGTTATAGATTACTTCATTATTTGATAGTTTGTCTGTTTGTTTGCTCTTTTTTGGGTATATTATGGTGAAGTATAGATTGAGTG
TTCGAGTGCATAACTGTTTATGCTAGATTTCTCCCAATTCCCCCTTAATTCTTACGAGTTCAAGCTTATTTATGGTCCTAAATTCATGTGTGTGTTATAAATGTAAATCT
TCCGTTAATACAAGGAAACTCTAGCTTCTCACCAAAGCTTTGTTGCATAATTAGTGCGTTCTTTTTTTCGAACTGTTCTGAGTTCATCAAGATGCTGG

Protein sequence

Show/hide protein sequence

MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

CmaCh04G016260 (gene) of Cucurbita maxima (Rimu) v1.1 genome