CuGenDBv2

Gene ID	CmaCh04G017970
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	Cma_Chr04:9071874..9072410
RNA-Seq Expression	CmaCh04G017970
Synteny	CmaCh04G017970
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7032326.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-84

97.75

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP  LLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

1.0e-85

98.88

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP PLLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

3.1e-87

100

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.1e-84

97.19

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP PLLPSKPT P+SLP+PSPKSSLAGSAIAGAIFST SFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

9.4e-76

91.67

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLP-IPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPN+T  PLLPSKPTRPISLP +P P K SLAG+AIAGAIFSTFS  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLP-IPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

4.4e-71

87.85

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Query:  MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+T  PLLPSKP T+PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

1.0e-75

91.11

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Query:  MAATMATMAILNAKCFTP-NRTPLPLLPSKPTRPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP N+TP+ LLPSKPT+PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTP-NRTPLPLLPSKPTRPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

1.0e-75

91.11

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Query:  MAATMATMAILNAKCFTP-NRTPLPLLPSKPTRPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP N+TP+ LLPSKPT+PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTP-NRTPLPLLPSKPTRPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

4.8e-86

98.88

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP PLLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

1.5e-87

100

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.3e-43

57.59

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P  L     ++P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

1.3e-43

59.3

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Query:  MAATMA-TMAILNAKCFTPNRTPLPLLPSKPT-RPISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T N         KPT +PISL P+    S L           AIAGA+F+T    D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFTPNRTPLPLLPSKPT-RPISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA I GLGL GL  SG L+ TPEA AA       +D RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

9.1e-45

57.59

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Query:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P  L     ++P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences

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CDS sequence

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ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCTACCACTCCTTCCCTCAAAGCCCACAAGACCCATCTCCCTCCC
AATCCCATCTCCCAAATCTTCTCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAG
CCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGG
ACCGAGAAGGCGGTGATTGCAGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCAGAGGCTTCCAACGACGCGAGAGGACA
GCTGCTACTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

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Protein sequence

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MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR
TEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

CmaCh04G017970 (gene) of Cucurbita maxima (Rimu) v1.1 genome