; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G018980 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G018980
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionsurvival of motor neuron-related-splicing factor 30
Genome locationCma_Chr04:9921490..9923676
RNA-Seq ExpressionCmaCh04G018980
SyntenyCmaCh04G018980
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032438.1 Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subsp. argyrosperma]3.5e-16100Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

XP_004142808.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]3.3e-1491.67Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

XP_022155149.1 survival of motor neuron-related-splicing factor 30 [Momordica charantia]3.3e-1491.67Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA+NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

XP_022933076.1 survival of motor neuron-related-splicing factor 30 [Cucurbita moschata]3.5e-16100Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

XP_038876515.1 survival of motor neuron-related-splicing factor 30 [Benincasa hispida]8.6e-1593.75Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA NLSTYKDQLQQVR+LLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

TrEMBL top hitse value%identityAlignment
A0A0A0KUI2 Uncharacterized protein1.6e-1491.67Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

A0A5A7UIS4 Survival of motor neuron-related-splicing factor 30 isoform X11.6e-1491.67Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

A0A6J1DPE2 survival of motor neuron-related-splicing factor 301.6e-1491.67Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVS+EELA+NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

A0A6J1EY48 survival of motor neuron-related-splicing factor 301.7e-16100Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

A0A6J1K7R2 survival of motor neuron-related-splicing factor 301.7e-16100Show/hide
Query:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
Subjt:  MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02570.1 nucleic acid binding;RNA binding6.1e-1165.22Show/hide
Query:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        G E++S+E+LA+++STYK+QL+QVR+LL +DP NSEY DMEKEL+E
Subjt:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

AT2G02570.2 nucleic acid binding;RNA binding6.1e-1165.22Show/hide
Query:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        G E++S+E+LA+++STYK+QL+QVR+LL +DP NSEY DMEKEL+E
Subjt:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

AT2G02570.3 nucleic acid binding;RNA binding6.1e-1165.22Show/hide
Query:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        G E++S+E+LA+++STYK+QL+QVR+LL +DP NSEY DMEKEL+E
Subjt:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE

AT2G02570.4 nucleic acid binding;RNA binding6.1e-1165.22Show/hide
Query:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE
        G E++S+E+LA+++STYK+QL+QVR+LL +DP NSEY DMEKEL+E
Subjt:  GGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAACTTCTCAATTCATCTTCTACCAAAATGCAAGGAGGAGAAGATGTAAGCATGGAAGAGTTGGCTACTAATCTCTCTACCTACAAAGACCAGCTTCAGCAGGT
CAGGGAGCTGTTAGATGATGATCCTGGCAACTCTGAGTACATAGATATGGAAAAGGAGCTTGAAGAGGAAACATGTTGTGGAAATACTAGAGAGTTATGGTCCCTGTGGA
GATTGTCATTCTCGTATTTGGGAGGAAAAGGTGTGCTAATATTCGTTGGCAAGTCTGCTCTTCCACTGACCTCCTTTCAGATGCTGATCCTGAGATTTAAGTTCTTGTGT
TTTTTTCTTTTTCTTTTTCTTTCCCTTCTTGGGACAAATACCTGCTCTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAACTTCTCAATTCATCTTCTACCAAAATGCAAGGAGGAGAAGATGTAAGCATGGAAGAGTTGGCTACTAATCTCTCTACCTACAAAGACCAGCTTCAGCAGGT
CAGGGAGCTGTTAGATGATGATCCTGGCAACTCTGAGTACATAGATATGGAAAAGGAGCTTGAAGAGGAAACATGTTGTGGAAATACTAGAGAGTTATGGTCCCTGTGGA
GATTGTCATTCTCGTATTTGGGAGGAAAAGGTGTGCTAATATTCGTTGGCAAGTCTGCTCTTCCACTGACCTCCTTTCAGATGCTGATCCTGAGATTTAAGTTCTTGTGT
TTTTTTCTTTTTCTTTTTCTTTCCCTTCTTGGGACAAATACCTGCTCTTTATGA
Protein sequenceShow/hide protein sequence
MFQLLNSSSTKMQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEEETCCGNTRELWSLWRLSFSYLGGKGVLIFVGKSALPLTSFQMLILRFKFLC
FFLFLFLSLLGTNTCSL