CuGenDBv2

Gene ID	CmaCh04G019400
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	splicing factor U2AF-associated protein 2
Genome location	Cma_Chr04:10579343..10580399
RNA-Seq Expression	CmaCh04G019400
Synteny	CmaCh04G019400
Gene Ontology terms	NA
InterPro domains	IPR034393 - TatSF1-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442163.1 PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo]

8.9e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

XP_038882573.1 splicing factor U2AF-associated protein 2 isoform X1 [Benincasa hispida]

6.8e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

XP_038882574.1 splicing factor U2AF-associated protein 2 isoform X2 [Benincasa hispida]

6.8e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

XP_038882575.1 splicing factor U2AF-associated protein 2 isoform X3 [Benincasa hispida]

6.8e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

XP_038882576.1 splicing factor U2AF-associated protein 2 isoform X4 [Benincasa hispida]

6.8e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ32 Uncharacterized protein

9.6e-22

46.3

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGG+QIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

A0A1S3B523 splicing factor U2AF-associated protein 2

4.3e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

A0A5A7TGW0 Splicing factor U2AF-associated protein 2

4.3e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

A0A5D3BUE8 Splicing factor U2AF-associated protein 2

4.3e-22

46.91

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGD FV+KKVDNKKKKKLKKVEDKILGWG        +P   I  F+                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDGLVNH +VRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

A0A6J1DXR6 splicing factor U2AF-associated protein 2

1.6e-21

46.3

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------
        MSV++AKFEQKGDTFV+KKVDNKKKKKLKKVE+KILGWG        +P   I  ++                                           
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG-----MCLVPR--IFYFLL------------------------------------------

Query:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD
                              FGGRQIHASEDDG VNH LVRDLEADAARLEQFGSELEAD
Subjt:  ----------------------FGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein

2.9e-15

35.4

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Query:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG----------MCLVPRIFYF-----------------------------------------
        MSVSRAKFEQKG+ F+ K+ DNKKKKKLKKVE K+LGWG            +V R  +                                          
Subjt:  MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWG----------MCLVPRIFYF-----------------------------------------

Query:  --------------------LLFGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEA
                              +  RQIHAS DDG VNH  VRD + +A RL+QF +ELEA
Subjt:  --------------------LLFGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEA

Sequences

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CDS sequence

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mRNA sequence

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ATGTCTGTTAGTCGAGCTAAGTTTGAGCAAAAAGGGGATACATTTGTAGCCAAAAAAGTAGACAACAAGAAGAAAAAGAAACTCAAAAAGGTTGAAGATAAGATA
CTTGGCTGGGGTATGTGTTTAGTACCTAGAATATTTTACTTTCTTCTGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGGTTTG
GTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCTCTGAACTCGAGGCTGACTAACTCTGTACTCCTCTACTACCCAAAGTTGTTCAGGTTTTA
TAATCAAGCCTTATGCCTGTATGAAACTCTTACCATTTTGTACGCTTTATTCAGATTAATATGGCCTTCCTAATGTTGCACCTAAAACATTTACGACTTTTAAGT
CTTGTGGTTTCTATAATGAAGGACCTCATAAAGGAGATGCTCTAAGTTAATGTTGATTCCACTTTGAGATA

Protein sequence

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MSVSRAKFEQKGDTFVAKKVDNKKKKKLKKVEDKILGWGMCLVPRIFYFLLFGGRQIHASEDDGLVNHGLVRDLEADAARLEQFGSELEAD

CmaCh04G019400 (gene) of Cucurbita maxima (Rimu) v1.1 genome