; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G019610 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019610
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein Ycf2
Genome locationCma_Chr04:10982879..10983938
RNA-Seq ExpressionCmaCh04G019610
SyntenyCmaCh04G019610
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF36790.1 conserved hypothetical protein [Ricinus communis]1.8e-1840.74Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPA
        F++SILFLLL+A YLVRTHLLFVSRAYSELQT+                        +  +  F+ +N       ++G        SASGGN LWGGGPA
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPA

Query:  YE----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------
        Y     +     L I    + K R++L              +   +FPSHGKPFSL LALS        G +    SYLVKYLATNSYLPFITV      
Subjt:  YE----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------

Query:  --------ADDSEDID
                 D+S+DID
Subjt:  --------ADDSEDID

EEF42587.1 conserved hypothetical protein [Ricinus communis]2.8e-1640.29Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKP
        F +SILFLLL+A YLVRTHLLFVSRAYSELQT+               +R+   R           S  N  W         ++  L+  + L   + + 
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKP

Query:  RVWLIVC-----------LNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLEAG---A
        RV L+              +FPSHGKPFSLRLALS        G +    SYLVKYLATN YLPFITV               DDS+DIDRD +      
Subjt:  RVWLIVC-----------LNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLEAG---A

Query:  FKMNAL
         +MNAL
Subjt:  FKMNAL

KJB15229.1 hypothetical protein B456_002G166000 [Gossypium raimondii]1.1e-1242.96Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHG
        F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                                P+Y  + H  L   Q++ +          +FPS G
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHG

Query:  KPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV
        KPFSLRLALS      PS  +  +ATNSY+PFITV
Subjt:  KPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV

RWR98289.1 hypothetical protein CKAN_02781900 [Cinnamomum micranthum f. kanehirae]1.1e-1237.95Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLI
        F++SILFLLL+A YLVRTHLLFV RA        +S L T+      +      +R+      + SG  M+   G  Y +   D H   ++     +S +
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLI

Query:  HKPRVWL--------------IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRD
         + R++L                  +FPSHGKPFSLRLALS       SYLVKYLATNSY+PFITV                    DDS+DID D
Subjt:  HKPRVWL--------------IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRD

RZC45462.1 hypothetical protein C5167_038438 [Papaver somniferum]1.1e-1237.91Show/hide
Query:  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG---GGSSASGGNMLWGGGPAY----
        LFLLL+A YLVRTHLLFVSRA SELQT+                        +  +  F+ +N       ++G        SASGGNML GGGP Y    
Subjt:  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG---GGSSASGGNMLWGGGPAY----

Query:  ----EKDRHSLLIIRQSLIHKP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSGE--------LDDPSYLVKYL
            +K  +  LI   S+I  P                  R++L              +   +FPSHGKPFSLRLALS               SYLVKYL
Subjt:  ----EKDRHSLLIIRQSLIHKP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSGE--------LDDPSYLVKYL

Query:  ATNSYLPFITV
        ATNSY+PFITV
Subjt:  ATNSYLPFITV

TrEMBL top hitse value%identityAlignment
A0A0D2Q7J9 Uncharacterized protein5.4e-1342.96Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHG
        F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                                P+Y  + H  L   Q++ +          +FPS G
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHG

Query:  KPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV
        KPFSLRLALS      PS  +  +ATNSY+PFITV
Subjt:  KPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV

A0A3S3NFH8 ATPase_AAA_core domain-containing protein5.4e-1337.95Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLI
        F++SILFLLL+A YLVRTHLLFV RA        +S L T+      +      +R+      + SG  M+   G  Y +   D H   ++     +S +
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLI

Query:  HKPRVWL--------------IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRD
         + R++L                  +FPSHGKPFSLRLALS       SYLVKYLATNSY+PFITV                    DDS+DID D
Subjt:  HKPRVWL--------------IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRD

A0A4Y7ICI4 Uncharacterized protein5.4e-1337.91Show/hide
Query:  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG---GGSSASGGNMLWGGGPAY----
        LFLLL+A YLVRTHLLFVSRA SELQT+                        +  +  F+ +N       ++G        SASGGNML GGGP Y    
Subjt:  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG---GGSSASGGNMLWGGGPAY----

Query:  ----EKDRHSLLIIRQSLIHKP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSGE--------LDDPSYLVKYL
            +K  +  LI   S+I  P                  R++L              +   +FPSHGKPFSLRLALS               SYLVKYL
Subjt:  ----EKDRHSLLIIRQSLIHKP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSGE--------LDDPSYLVKYL

Query:  ATNSYLPFITV
        ATNSY+PFITV
Subjt:  ATNSYLPFITV

B9S1C2 ATPase_AAA_core domain-containing protein1.4e-1640.29Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKP
        F +SILFLLL+A YLVRTHLLFVSRAYSELQT+               +R+   R           S  N  W         ++  L+  + L   + + 
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKP

Query:  RVWLIVC-----------LNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLEAG---A
        RV L+              +FPSHGKPFSLRLALS        G +    SYLVKYLATN YLPFITV               DDS+DIDRD +      
Subjt:  RVWLIVC-----------LNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLEAG---A

Query:  FKMNAL
         +MNAL
Subjt:  FKMNAL

B9SHW9 AAA domain-containing protein8.6e-1940.74Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPA
        F++SILFLLL+A YLVRTHLLFVSRAYSELQT+                        +  +  F+ +N       ++G        SASGGN LWGGGPA
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPA

Query:  YE----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------
        Y     +     L I    + K R++L              +   +FPSHGKPFSL LALS        G +    SYLVKYLATNSYLPFITV      
Subjt:  YE----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------

Query:  --------ADDSEDID
                 D+S+DID
Subjt:  --------ADDSEDID

SwissProt top hitse value%identityAlignment
A0A379 Protein Ycf21.6e-0946.51Show/hide
Query:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV-------------------------ADDSEDIDRDLE
        +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV                          D S+DIDRDL+
Subjt:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV-------------------------ADDSEDIDRDLE

A0A379 Protein Ycf22.6e-0475.76Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD
        F++S LFLLL+A YLVRTHLLFVSR  SELQT+
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD

A4GGE1 Protein Ycf23.4e-1243.12Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLVKYLATNSYLPFITV-----------------------ADD
        +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLVKYLA NSY+PFITV                       +DD
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLVKYLATNSYLPFITV-----------------------ADD

Query:  SEDIDRDLE
        S+DIDRDL+
Subjt:  SEDIDRDLE

A4GGE1 Protein Ycf24.7e-0670Show/hide
Query:  RQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD
        R +    F +SILFLLL+A YLVRTHLLFVSR YSELQT+
Subjt:  RQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD

A6MMQ1 Protein Ycf29.2e-1047.67Show/hide
Query:  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRDLEAGAFKM
        +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV                    D+S+DID DL+     M
Subjt:  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV-------------------ADDSEDIDRDLEAGAFKM

A6MMQ1 Protein Ycf21.3e-0378.12Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQT
        F++SILFLLL+A YLVR HLLFV RA SELQT
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQT

P08973 Protein Ycf21.8e-1054.67Show/hide
Query:  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLE
        +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV               D S+DIDRDL+
Subjt:  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV--------------ADDSEDIDRDLE

P08973 Protein Ycf25.8e-0475.76Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD
        F +SILFLL +A YLVRTHLLFV RA SELQT+
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD

Q2QD30 Protein Ycf23.7e-1142.34Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGEL------DDPSYLVKYLATNSYLPFITV----------------------------A
        +R + L   Q++ H          +FPSHGK FSLRLALS G L         SYLVKYLATNSYLPFITV                             
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGEL------DDPSYLVKYLATNSYLPFITV----------------------------A

Query:  DDSEDIDRDLE
        DDS+DIDRDL+
Subjt:  DDSEDIDRDLE

Q2QD30 Protein Ycf22.5e-0787.88Show/hide
Query:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD
        F++SILFLLL+AVYLVRTHLLFVSRAYSELQT+
Subjt:  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD

Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.2e-0965.31Show/hide
Query:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV
        +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV
Subjt:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core3.3e-0741.84Show/hide
Query:  IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY
        ++SILFLLL+A Y+VRTHLLFVSRAYSELQT+                        +  +  F+ +N       ++G        SGGNMLWGG PAY
Subjt:  IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.2e-0965.31Show/hide
Query:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV
        +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV
Subjt:  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core3.3e-0741.84Show/hide
Query:  IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY
        ++SILFLLL+A Y+VRTHLLFVSRAYSELQT+                        +  +  F+ +N       ++G        SGGNMLWGG PAY
Subjt:  IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACA
TCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTT
CTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTT
TGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTA
TCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACA
TCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTT
CTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTT
TGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTA
TCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA
Protein sequenceShow/hide protein sequence
MSHHRYRHICDRQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIV
CLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITVADDSEDIDRDLEAGAFKMNALWI