CuGenDBv2

Gene ID	CmaCh04G019640
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II protein D1
Genome location	Cma_Chr04:11023927..11032723
RNA-Seq Expression	CmaCh04G019640
Synteny	CmaCh04G019640
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QFQ40473.1 photosystem II protein D1 [Phyllagathis velutina]

4.5e-80

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLATVE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

QMS49634.1 photosystem II protein D1 [Lindera erythrocarpa]

4.5e-80

94.55

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Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLATVE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

YP_009428058.1 photosystem II protein D1 [Echinacanthus lofouensis]

2.7e-80

94.55

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Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLAT+E
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

YP_009527389.1 photosystem II protein D1 [Echinacanthus longzhouensis]

2.7e-80

94.55

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Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLAT+E
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

YP_010146133.1 photosystem II protein D1 [Euonymus maackii]

4.5e-80

94.55

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Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLATVE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

TrEMBL top hits

e value

%identity

Alignment

A0A286R0D8 Photosystem II protein D1

1.3e-80

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLAT+E
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

A0A385NG75 Photosystem II protein D1

1.3e-80

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLAT+E
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

A0A385NGD6 Photosystem II protein D1

1.3e-80

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLAT+E
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

B7T3C5 Photosystem II protein D1

2.2e-80

93.45

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Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVEHHS
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLATVE  S
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVEHHS

D5MAN5 Photosystem II protein D1

2.2e-80

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLATVE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

SwissProt top hits

e value

%identity

Alignment

P05337 Photosystem II protein D1

1.0e-82

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLA VE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

P10510 Photosystem II protein D1

1.0e-82

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLA VE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

P12463 Photosystem II protein D1

1.0e-82

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLA VE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

P56318 Photosystem II protein D1

1.0e-82

94.55

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLA VE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

Q1KVU8 Photosystem II protein D1

1.3e-82

93.94

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE
              GISTMAFNLNGFNFNQSVVDSQGRV+NTWADIINRANLGMEVM+ERNAHNFPLDLA+VE
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

1.6e-83

92.31

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-
        MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV 
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-

Query:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVEHHSS
              GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVM+ERNAHNFPLDLA VE  S+
Subjt:  ------GISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVEHHSS

ATCG00270.1 photosystem II reaction center protein D

2.3e-13

33.85

Show/hide

Query:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVG
        ++ FQ  HN  ++PFHM+GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++ ++     +F+N R LHFF+   PV G
Subjt:  MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVG

Query:  ISTMAFNLNGFNFNQSVVDSQGRVINTWAD
        +   A  + G   N    D   + I    D
Subjt:  ISTMAFNLNGFNFNQSVVDSQGRVINTWAD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT
AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG
GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTAGCACTATGGCTTTCAACTTAAATGGT
TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGTATGAACGTAATGC
TCACAACTTCCCTCTAGACCTAGCTACTGTTGAACATCATTCAAGTAAATACAGATTGAGATCGTAG

mRNA sequence

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Protein sequence

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MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGISTMAFNLNG
FNFNQSVVDSQGRVINTWADIINRANLGMEVMYERNAHNFPLDLATVEHHSSKYRLRS

CmaCh04G019640 (gene) of Cucurbita maxima (Rimu) v1.1 genome