CuGenDBv2

Gene ID	CmaCh04G019670
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II D2 protein
Genome location	Cma_Chr04:11157359..11158389
RNA-Seq Expression	CmaCh04G019670
Synteny	CmaCh04G019670
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG5609319.1 hypothetical protein H5410_020600 [Solanum commersonii]

7.5e-11

74.55

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Query:  MDDSLRRDRFGLVVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        MDD LRRDRF  VVT LW+S LGVVGLALNL  YDF  Q IRAV E+PEFET YT
Subjt:  MDDSLRRDRFGLVVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

OIW15381.1 hypothetical protein TanjilG_24366 [Lupinus angustifolius]

2.4e-09

55.29

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Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        MTIA+ K TK+ ND  F+IMDD L+ D       FGL++      ALW     VVGLALNLR YDF SQ+IR   EDPEFET YT
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

PLY96960.1 hypothetical protein LSAT_4X102120 [Lactuca sativa]

1.8e-09

86.05

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Query:  VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VVT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFETLYT
Subjt:  VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

VDD26425.1 unnamed protein product [Brassica rapa]

8.6e-15

76.92

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT  Y   S  RRYS LDGGSRSAS
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

YP_009715474.1 photosystem II protein D2 [Erythrostemon gilliesii]

5.9e-16

78.46

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT    + SL RRYSCLDGGSRSAS
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

TrEMBL top hits

e value

%identity

Alignment

A0A1J7IM84 Uncharacterized protein

1.2e-09

55.29

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Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        MTIA+ K TK+ ND  F+IMDD L+ D       FGL++      ALW     VVGLALNLR YDF SQ+IR   EDPEFET YT
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

A0A2J6MBJ7 Uncharacterized protein

9.0e-10

86.05

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Query:  VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VVT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFETLYT
Subjt:  VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

A0A3P6DWI1 Photosystem II D2 protein

4.1e-15

76.92

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT  Y   S  RRYS LDGGSRSAS
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

A0A4Y7L596 Uncharacterized protein

2.6e-09

77.78

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLY
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT ++
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLY

A0A649X4Q6 Photosystem II D2 protein

2.9e-16

78.46

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT    + SL RRYSCLDGGSRSAS
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

SwissProt top hits

e value

%identity

Alignment

A4QJB0 Photosystem II D2 protein

2.1e-11

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

A4QJJ4 Photosystem II D2 protein

2.1e-11

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

Q3V539 Photosystem II D2 protein

2.1e-11

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

Q4FFP4 Photosystem II D2 protein

2.1e-11

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

Q70Y08 Photosystem II D2 protein

2.1e-11

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00270.1 photosystem II reaction center protein D

1.5e-12

83.33

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Query:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT
        VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Subjt:  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT

Sequences

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CDS sequence

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ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTAGTAACTGCT
TTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGTCTATGACTTCGGTTCTCAGGAAATCCGTGCAGTAGGGGAAGATCCTGAATTTGAG
ACTTTATATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

mRNA sequence

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Protein sequence

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MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

CmaCh04G019670 (gene) of Cucurbita maxima (Rimu) v1.1 genome