| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 9.9e-158 | 46.01 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVLTEECP P+ NANRTVR+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+E MFGQPS+SLRHEAIK+IY RMKEGTSVREHVLD
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAISK-KLLRGSSSKNKSGSSTSKSVLM
MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+NLT+LLNELQ +Q+L +KG+ EA VA++K K +RGSSSKNK G S ++ M
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAISK-KLLRGSSSKNKSGSSTSKSVLM
Query: KKKGKVKNKIPTNRNKVQK-TDKGKCFHCNENGHWKRIYPKYLDEKKVEK--------------------------------------------------
KKKGK K N +KV+K DKGKCFHCN++GHWKR PKYL EKK EK
Subjt: KKKGKVKNKIPTNRNKVQK-TDKGKCFHCNENGHWKRIYPKYLDEKKVEK--------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
T +G RAK LEL+ +DL G MNVKARGGYEYFISFID
Subjt: --------------------------------------------------------------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAEN----------------------------------LLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
D+SRYG++YL+ HK E+ EKF+EYK E EN L AP PQQNGVSERRNRTLLDMVRSMMS+AQLPD
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAEN----------------------------------LLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYA+ET +ILN VP KSV ETPYELWKGRK GYPKE++ GLFY PQEN+VF TNATFLEEDH R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
NHQPRSK+VL E+ K ATDK + ST+VVD A+ S QSH SQELR+PRRSGRV+ QP+RYL L ETQ+IIPDDG+EDPLTYKQ
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa] | 1.6e-160 | 55.69 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL E+CP P++NA RTVR+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MMVHFNVA NE VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CF CN+ GHWKR PKYL +KK K T +G+RAK+ LEL+ +DL G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLL----------------------------------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
DYSRYGY+YLM+HK EALEKF+EYK E EN L AP PQQNGVSERRNRTLLDMVRSMMS+A LP+
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLL----------------------------------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYAV+T YILN VP KSVSETP +LW G K GYPK + G FYDP++N+VF TNATFLEEDH+R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
H+PRSK+VL+E+SKE T+ +TRVV++ RVV +S ++H Q LR PRRSGRV P RY+SL ET +I D IEDPLT+K+
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa] | 7.3e-169 | 62.45 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP + NA RTVR+ YD W KAN+KAR YILAS+S VLAKKH++M TA EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
M+VHFNVAE N VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S S
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CFHCN+ GHWKR PKYL E K K T +G+RAK+ LEL+ +DL GLMNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
DYSRYGY+YLM+HK +ALEKF+EYK E EN L PG PQQNGVSERRNRTLLDMV SMMS+A LP+ FWGYAV+T YILN VP KSVSETP +LW GRKG
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
Query: YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYL
YPK + FYDP++N+VF TNATFLE+DH+R H+P +K+VL+E+SKE T+ +TRVV++ TRVV +S ++H Q LR PRRSGRV P RY+
Subjt: YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYL
Query: SLAETQVIIPDDGIEDPLTYKQ
SL ET +I D IEDPLT+K+
Subjt: SLAETQVIIPDDGIEDPLTYKQ
|
|
| KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa] | 2.8e-152 | 55.5 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP ++NA RTVR+AY+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MM+HFNVAE E VIDE SQ++ Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S NK S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N +K K KG CFHCN+ GHWKR PKYL EKK K T +G+R K+ LEL+ ++L G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
DYSRYGY+YLM+HK EALEKF+EYK E EN L PG PQQNGVSERRNRTLLDMVRS+MS+ +LP+ FWGYAV+T YILN VP KSVSETP +LW GRKG
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
Query: ---------------------------------YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRV
YPK + G FYDP++N+VF TNATFLEED++R H+PRSK+VL+E+SKE T+ +TRVV++ TRV
Subjt: ---------------------------------YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRV
Query: VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
V + ++H Q LR PRRSGRV P RY+SL ET +I D IEDPLT+K+
Subjt: VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa] | 3.9e-162 | 55.69 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP P++NA RTVR+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MMVHFNVAE N VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CFHCN+ GHWKR PKYL EKK K T +G++AK+ LEL+ +DL G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLA----------------------------------PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
DYSRYGY+YLM+HK EALEKF+EYK E EN L+ PG PQQNGVS+RRNRTLLDMVRSMMS+ LP+
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLA----------------------------------PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYAV+T YILN VP KSVS+TP +LW GRK GYPK + G FYDP++N+VF TNATFLEEDH+R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
H+PRSK+VL+E+SKE T+ +TRVV++ TRVV +S ++H Q LR PRRSGRV P Y+SL ET +I D IEDPLT+K+
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMN4 Gag/pol protein | 3.5e-169 | 62.45 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP + NA RTVR+ YD W KAN+KAR YILAS+S VLAKKH++M TA EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
M+VHFNVAE N VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S S
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CFHCN+ GHWKR PKYL E K K T +G+RAK+ LEL+ +DL GLMNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
DYSRYGY+YLM+HK +ALEKF+EYK E EN L PG PQQNGVSERRNRTLLDMV SMMS+A LP+ FWGYAV+T YILN VP KSVSETP +LW GRKG
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
Query: YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYL
YPK + FYDP++N+VF TNATFLE+DH+R H+P +K+VL+E+SKE T+ +TRVV++ TRVV +S ++H Q LR PRRSGRV P RY+
Subjt: YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYL
Query: SLAETQVIIPDDGIEDPLTYKQ
SL ET +I D IEDPLT+K+
Subjt: SLAETQVIIPDDGIEDPLTYKQ
|
|
| A0A5A7SNP8 Gag/pol protein | 7.9e-161 | 55.69 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL E+CP P++NA RTVR+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MMVHFNVA NE VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CF CN+ GHWKR PKYL +KK K T +G+RAK+ LEL+ +DL G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLL----------------------------------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
DYSRYGY+YLM+HK EALEKF+EYK E EN L AP PQQNGVSERRNRTLLDMVRSMMS+A LP+
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLL----------------------------------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYAV+T YILN VP KSVSETP +LW G K GYPK + G FYDP++N+VF TNATFLEEDH+R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
H+PRSK+VL+E+SKE T+ +TRVV++ RVV +S ++H Q LR PRRSGRV P RY+SL ET +I D IEDPLT+K+
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| A0A5A7T706 Gag/pol protein | 1.3e-152 | 55.5 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP ++NA RTVR+AY+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MM+HFNVAE E VIDE SQ++ Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S NK S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N +K K KG CFHCN+ GHWKR PKYL EKK K T +G+R K+ LEL+ ++L G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
DYSRYGY+YLM+HK EALEKF+EYK E EN L PG PQQNGVSERRNRTLLDMVRS+MS+ +LP+ FWGYAV+T YILN VP KSVSETP +LW GRKG
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVSETPYELWKGRKG
Query: ---------------------------------YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRV
YPK + G FYDP++N+VF TNATFLEED++R H+PRSK+VL+E+SKE T+ +TRVV++ TRV
Subjt: ---------------------------------YPKEAKCGLFYDPQENRVF-DTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRV
Query: VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
V + ++H Q LR PRRSGRV P RY+SL ET +I D IEDPLT+K+
Subjt: VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| A0A5A7U869 Gag/pol protein | 1.9e-162 | 55.69 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVL EECP P++NA RTVR+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+E MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
MMVHFNVAE N VIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT+LLNELQT++SL+ KGQ GEA VA S +K RGS+S KS S+S +
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAIS-KKLLRGSSSKNKSGSSTSKSVLM
Query: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
KKK G N K K KG CFHCN+ GHWKR PKYL EKK K T +G++AK+ LEL+ +DL G MNVKARGG+EYFI+F D
Subjt: KKK----GKVKNKIPTNRNKVQKTDKGKCFHCNENGHWKRIYPKYLDEKKVEK---------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLA----------------------------------PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
DYSRYGY+YLM+HK EALEKF+EYK E EN L+ PG PQQNGVS+RRNRTLLDMVRSMMS+ LP+
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAENLLA----------------------------------PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYAV+T YILN VP KSVS+TP +LW GRK GYPK + G FYDP++N+VF TNATFLEEDH+R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
H+PRSK+VL+E+SKE T+ +TRVV++ TRVV +S ++H Q LR PRRSGRV P Y+SL ET +I D IEDPLT+K+
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| E2GK51 Gag/pol protein (Fragment) | 4.8e-158 | 46.01 | Show/hide |
Query: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
RFVLTEECP P+ NANRTVR+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+E MFGQPS+SLRHEAIK+IY RMKEGTSVREHVLD
Subjt: RFVLTEECPPNPSSNANRTVRDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKEGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLD
Query: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAISK-KLLRGSSSKNKSGSSTSKSVLM
MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+NLT+LLNELQ +Q+L +KG+ EA VA++K K +RGSSSKNK G S ++ M
Subjt: MMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTSLLNELQTYQSLLTNKGQTGEAIVAISK-KLLRGSSSKNKSGSSTSKSVLM
Query: KKKGKVKNKIPTNRNKVQK-TDKGKCFHCNENGHWKRIYPKYLDEKKVEK--------------------------------------------------
KKKGK K N +KV+K DKGKCFHCN++GHWKR PKYL EKK EK
Subjt: KKKGKVKNKIPTNRNKVQK-TDKGKCFHCNENGHWKRIYPKYLDEKKVEK--------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
T +G RAK LEL+ +DL G MNVKARGGYEYFISFID
Subjt: --------------------------------------------------------------TQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFID
Query: DYSRYGYLYLMRHKFEALEKFREYKTEAEN----------------------------------LLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
D+SRYG++YL+ HK E+ EKF+EYK E EN L AP PQQNGVSERRNRTLLDMVRSMMS+AQLPD
Subjt: DYSRYGYLYLMRHKFEALEKFREYKTEAEN----------------------------------LLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDP
Query: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
FWGYA+ET +ILN VP KSV ETPYELWKGRK GYPKE++ GLFY PQEN+VF TNATFLEEDH R
Subjt: FWGYAVETTTYILNMVPIKSVSETPYELWKGRK---------------------------------GYPKEAKCGLFYDPQENRVF-DTNATFLEEDHVR
Query: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
NHQPRSK+VL E+ K ATDK + ST+VVD A+ S QSH SQELR+PRRSGRV+ QP+RYL L ETQ+IIPDDG+EDPLTYKQ
Subjt: NHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRYLSLAETQVIIPDDGIEDPLTYKQ
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.5e-15 | 28 | Show/hide |
Query: NGHWKRIYPKYLDEKKVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAE--------------
NG R+ K L +K K+ L ++ +D+ G + YF+ F+D ++ Y YL+++K + F+++ ++E
Subjt: NGHWKRIYPKYLDEKKVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAE--------------
Query: --------------------NLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSV---SETPYELWKGRKGYPKEAK
+L P PQ NGVSER RT+ + R+M+S A+L FWG AV T TY++N +P +++ S+TPYE+W +K Y K +
Subjt: --------------------NLLAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSV---SETPYELWKGRKGYPKEAK
|
|
| P0C2J0 Transposon Ty1-PR2 Gag-Pol polyprotein | 4.5e-04 | 25.64 | Show/hide |
Query: KTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLY-------------------LMRHKFEA------LEKFREYKT-------EAE
K Q Y Q L TD++G ++ + YFISF D+ +++ ++Y ++++F+A +++ EY E +
Subjt: KTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLY-------------------LMRHKFEA------LEKFREYKT-------EAE
Query: NLLAP-----GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILN
N + P + +GV+ER NRTLLD R+ + + LP+ W A+E +T + N
Subjt: NLLAP-----GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILN
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.5e-17 | 25.37 | Show/hide |
Query: RAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAE----------------------------------NLLA
R L+L+ +D+ G M +++ GG +YF++FIDD SR ++Y+++ K + + F+++ E
Subjt: RAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAE----------------------------------NLLA
Query: PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVP-IKSVSETPYELWKGRK---------------GYPKEAKCGL--------
PG PQ NGV+ER NRT+++ VRSM+ A+LP FWG AV+T Y++N P + E P +W ++ PKE + L
Subjt: PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVP-IKSVSETPYELWKGRK---------------GYPKEAKCGL--------
Query: ------------FYDPQENRVFDTNATFLEEDHVRNHQPRSKLVLSEI----------------SKEATDKTTRVVDQAGPSTRVVDGADTSGQ--SHPS
+DP + +V + E VR S+ V + I ++ TD+ + +Q G + D + HP+
Subjt: ------------FYDPQENRVFDTNATFLEEDHVRNHQPRSKLVLSEI----------------SKEATDKTTRVVDQAGPSTRVVDGADTSGQ--SHPS
Query: Q--ELRMP-RRSGRVITQPDRYLSLAETQVIIPDD
Q E P RRS R + RY S V+I DD
Subjt: Q--ELRMP-RRSGRVITQPDRYLSLAETQVIIPDD
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.3e-10 | 23.21 | Show/hide |
Query: KVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAENLL--------------------------
KV +Q + + LE + +D++ + + Y Y++ F+D ++RY +LY ++ K + E F +K EN
Subjt: KVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAENLL--------------------------
Query: ------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVS-ETPYE
P P+ NG+SER++R +++ +++S A +P +W YA Y++N +P + E+P++
Subjt: ------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVPIKSVS-ETPYE
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.3e-08 | 22.93 | Show/hide |
Query: KVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAENLL--------------------------
KV + + + LE + +D++ + + Y Y++ F+D ++RY +LY ++ K + + F +K+ EN
Subjt: KVEKTQQGYRAKQTLELMLTDLYGLMNVKARGGYEYFISFIDDYSRYGYLYLMRHKFEALEKFREYKTEAENLL--------------------------
Query: ------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVP
P P+ NG+SER++R +++M +++S A +P +W YA Y++N +P
Subjt: ------APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETTTYILNMVP
|
|
