; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G019730 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019730
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal protein S13
Genome locationCma_Chr04:11383761..11396564
RNA-Seq ExpressionCmaCh04G019730
SyntenyCmaCh04G019730
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEN56112.1 ribosomal protein S13 [Cucumis melo subsp. melo]1.7e-5396.46Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

XP_038887163.1 ribosomal protein S13, mitochondrial [Benincasa hispida]3.9e-5395.58Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSV DKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

YP_003587349.1 ribosomal protein S13 [Cucurbita pepo]1.6e-5194.69Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GAR VADKQVRIA TKIDGIGPKKAIQV YRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIER ISLSCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

YP_006291804.1 ribosomal protein S13 [Daucus carota subsp. sativus]1.6e-5191.3Show/hide
Query:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ
        L + GARSVADKQVRIASTK+ GIGPKKAIQVRYRLGISGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQ
Subjt:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ

Query:  RTHTNARTCRKRIRK
        RTHTNARTCRK+IRK
Subjt:  RTHTNARTCRKRIRK

YP_009913633.1 ribosomal protein S13 [Luffa acutangula]1.0e-5396.46Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

TrEMBL top hitse value%identityAlignment
A0A3S9JII2 Ribosomal protein S138.4e-5496.46Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

A0A7D6C5F5 Ribosomal protein S135.0e-5496.46Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

A0A7G8P5J5 Ribosomal protein S137.9e-5291.3Show/hide
Query:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ
        L + GARSVADKQVRIASTK+ GIGPKKAIQVRYRLGISGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQ
Subjt:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ

Query:  RTHTNARTCRKRIRK
        RTHTNARTCRK+IRK
Subjt:  RTHTNARTCRKRIRK

A0A7G8P5K4 Ribosomal protein S137.9e-5291.3Show/hide
Query:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ
        L + GARSVADKQVRIASTK+ GIGPKKAIQVRYRLGISGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQ
Subjt:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ

Query:  RTHTNARTCRKRIRK
        RTHTNARTCRK+IRK
Subjt:  RTHTNARTCRKRIRK

G3EU28 Ribosomal protein S138.4e-5496.46Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNARTCRKRIRK
Subjt:  HTNARTCRKRIRK

SwissProt top hitse value%identityAlignment
P05488 Ribosomal protein S13, mitochondrial9.0e-5389.57Show/hide
Query:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ
        L + GAR V D+QVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGERADIER IS+SCYRGIRHQDG PLRGQ
Subjt:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ

Query:  RTHTNARTCRKRIRK
        RTHTNARTCRK IRK
Subjt:  RTHTNARTCRKRIRK

P07924 Ribosomal protein S13, mitochondrial1.8e-4884.07Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARS+ D+QVRIASTK+DGIGPKKAIQ+RYRLGISGNIK+ ELTK QIDQIEQMI QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNART RK+IRK
Subjt:  HTNARTCRKRIRK

P08977 Ribosomal protein S13, mitochondrial1.0e-4884.96Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GARS+ D+QVRIASTK+DGIGPKKAIQ+RYRLGISGNIKI ELTK QIDQIEQMI QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRGQRT
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNART RK+IRK
Subjt:  HTNARTCRKRIRK

P15758 Ribosomal protein S13, mitochondrial3.9e-4886.73Show/hide
Query:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + GAR VAD+QVRIASTK+DGIGPKKAIQVR RLG  GNIK KELTK QIDQIEQM GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQR+
Subjt:  LRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCRKRIRK
        HTNART RKRIRK
Subjt:  HTNARTCRKRIRK

P23209 Ribosomal protein S13, mitochondrial4.5e-5288.7Show/hide
Query:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ
        L + GAR VADKQVRIA TK+ GIGPKKAIQV YRLGISGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQ
Subjt:  LPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQ

Query:  RTHTNARTCRKRIRK
        RTHTNARTCRK+IRK
Subjt:  RTHTNARTCRKRIRK

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family1.2e-0428.81Show/hide
Query:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+ ++ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT1G34030.1 Ribosomal protein S13/S18 family1.2e-0428.81Show/hide
Query:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+ ++ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT1G77750.1 Ribosomal protein S13/S18 family2.2e-1437.61Show/hide
Query:  YRGIRHQDGLPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRH
        + G+R Q G+ +  A    +K ++    ++ GIG +K+ QV   LGI+  +  ++LT  ++  + + +GQ H    EL+R   ++I+R + + CYRG RH
Subjt:  YRGIRHQDGLPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRH

Query:  QDGLPLRGQRTHTNART
        + GLP RGQRT TNART
Subjt:  QDGLPLRGQRTHTNART

AT4G09800.1 S18 ribosomal protein1.2e-0428.81Show/hide
Query:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+ ++ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT5G14320.1 Ribosomal protein S13/S18 family2.8e-0931.13Show/hide
Query:  GARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHT
        G    A+K++  +   I GIG  +A Q+   L +   I  K++ + ++  +   + + +++  +L+R     I+R   + CYRG+RH  GLP RGQRT  
Subjt:  GARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHT

Query:  NARTCR
        N RT +
Subjt:  NARTCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTACATCTTGCAAGCCAATTTTGGAGCAGCCTTGTGATAATGAAACCAACCGGCAAAAAGCATTAAGGCTGAAAAGACTAATGGACCAATTGCGATTAGTTGC
CGATAAACAAGTCAGAATTGCCTCGACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAAGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGT
TAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGACGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTT
TCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACC
TAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATC
ATATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGT
CAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTACATCTTGCAAGCCAATTTTGGAGCAGCCTTGTGATAATGAAACCAACCGGCAAAAAGCATTAAGGCTGAAAAGACTAATGGACCAATTGCGATTAGTTGC
CGATAAACAAGTCAGAATTGCCTCGACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAAGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGT
TAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGACGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTT
TCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACC
TAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATC
ATATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGT
CAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGA
Protein sequenceShow/hide protein sequence
MDSTSCKPILEQPCDNETNRQKALRLKRLMDQLRLVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKTGERADIERFISL
SCYRGIRHQDGLPLRGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
QRTHTNARTCRKRIRK