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CmaCh04G019770 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019770
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionCCHC-type domain-containing protein
Genome locationCma_Chr04:11511144..11515830
RNA-Seq ExpressionCmaCh04G019770
SyntenyCmaCh04G019770
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022971169.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima]2.2e-7788.7Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK
        MERLIRGIEELTDRIGR EIQNQARQRIPLPTPSTDTYEGDNSDHH+DNP V  + LM       RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK

Query:  LQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        LQALKQGRKSVE+YYKEMDTLMD+LELDEDMEALMA FLNGLNTEIA+KTDLQPYSNI+ELLHI IKIERQIQRRSQ
Subjt:  LQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]1.6e-7262.4Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------
        MERLIRGIEELTDRIGR EIQNQARQRIP PTPSTDTYEGDNSDHH+DNPH VGHGLMRGRDHGR                                   
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------

Query:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD
                                                      RRRNLEAPIDSW EFKESMRKRFVPQYF RDMAQKLQALKQGRKSVE+YYKEMD
Subjt:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD

Query:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        TLMDRL        LMARFLNGLNTEIADKTDLQPYSNI+ELLHIAIKIERQIQRRSQ
Subjt:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]7.6e-7865.12Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------
        MERLIRGIEELTDRIGR EIQNQARQRIP PTPSTDTYEGDNSDHH+DNPH VGHGLMRGRDHGR                                   
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------

Query:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD
                                                      RRRNLEAPIDSW EFKESMRKRFVPQYF RDMAQKLQALKQGRKSVE+YYKEMD
Subjt:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD

Query:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        TLMDRL+LDEDMEALMARFLNGLNTEIADKTDLQPYSNI+ELLHIAIKIERQIQRRSQ
Subjt:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

XP_023541047.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo]1.0e-7463.18Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------
        MERLIRGIEELTDRIGR EIQNQARQR PLPTPST+TYEGDN DHH+DNPH VGHGLMRGRDHGR                                   
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------

Query:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD
                                                      RRRNLEAPIDSWVEFKESMRK FVPQYF RDMAQKLQALKQGRKS E+YYKEMD
Subjt:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD

Query:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        TLMDRLELDE+MEALMARFLNGLNT+IADKTDLQPYSNI+ELLHIAIKI+RQIQRRSQ
Subjt:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

XP_023553652.1 uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]1.7e-7764.73Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------
        M+RLIRGIEELTDRIGR EIQNQARQRIPLP PSTDTYEGDNSDHH+DNPH VGHGLMRGRDHGR                                   
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGR-----------------------------------

Query:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD
                                                      RRRNLEAPIDSW EFKESMRKRFVPQYF RDMAQKLQALKQGRKSVE+YYKEMD
Subjt:  ----------------------------------------------RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMD

Query:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        TLMDRL+LDEDMEALMARFLNGLNTEIADKTDLQPYSNI+ELLHIAIKIERQIQRRSQ
Subjt:  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

TrEMBL top hitse value%identityAlignment
A0A6J1EQJ1 uncharacterized protein LOC1114365302.3e-5196.43Show/hide
Query:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA
        RRRNLEAPIDSWVEFKESMRKRFVPQYF RDMAQKLQALKQGRKSVE+YYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNI+ELLHIA
Subjt:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA

Query:  IKIERQIQRRSQ
        IKIERQIQRRSQ
Subjt:  IKIERQIQRRSQ

A0A6J1EVV9 uncharacterized protein LOC1114364632.3e-5196.43Show/hide
Query:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA
        RRRNLEAPIDSWVEFKESMRKRFVPQYF RDMAQKLQALKQGRKSVE+YYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNI+ELLHIA
Subjt:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA

Query:  IKIERQIQRRSQ
        IKIERQIQRRSQ
Subjt:  IKIERQIQRRSQ

A0A6J1G2Q3 uncharacterized protein LOC1114502868.6e-5195.54Show/hide
Query:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA
        RRRNLEAPIDSWVEFKESMRK FVPQYF RDMAQKLQALKQGRKSVE+YYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNI+ELLHIA
Subjt:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA

Query:  IKIERQIQRRSQ
        IKIERQIQRRSQ
Subjt:  IKIERQIQRRSQ

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699481.1e-7788.7Show/hide
Query:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK
        MERLIRGIEELTDRIGR EIQNQARQRIPLPTPSTDTYEGDNSDHH+DNP V  + LM       RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK
Subjt:  MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK

Query:  LQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
        LQALKQGRKSVE+YYKEMDTLMD+LELDEDMEALMA FLNGLNTEIA+KTDLQPYSNI+ELLHI IKIERQIQRRSQ
Subjt:  LQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ

A0A6J1I8S0 uncharacterized protein LOC1114724893.5e-5297.32Show/hide
Query:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA
        RRRNLEAPIDSWVEFKESMRKRFVPQYFH DMAQKLQALKQGRKSVE+YYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI+ELLHIA
Subjt:  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIA

Query:  IKIERQIQRRSQ
        IKIERQIQRRSQ
Subjt:  IKIERQIQRRSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGCAGATTTGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATAC
ATATGAGGGCGACAATTCTGATCACCACGATGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAATCTTGAAGCACCAA
TTGATTCATGGGTAGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCT
GTGGAGAATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGC
GGACAAGACTGATTTACAGCCTTATTCTAATATTAAGGAGTTGTTGCACATTGCAATTAAGATTGAGAGGCAAATCCAACGAAGGTCTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGCAGATTTGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATAC
ATATGAGGGCGACAATTCTGATCACCACGATGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAATCTTGAAGCACCAA
TTGATTCATGGGTAGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCT
GTGGAGAATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGC
GGACAAGACTGATTTACAGCCTTATTCTAATATTAAGGAGTTGTTGCACATTGCAATTAAGATTGAGAGGCAAATCCAACGAAGGTCTCAATGACTATTCTTGTACTTAT
GTGCAAGGGATCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTGTGCTTTTGAAAGAGTTTGAAGATTTATTTTTCGAGGAGACACATAGTAGT
TTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGTGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGATACAAAGGC
AAGTGATGGCTTTGATTCGAGGACGAATCTTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCTAATTACAAGAACGAGAGCTA
AGAAGTTACAACAAACCTTATACAGTTCTATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTTCCTTATATGTTGTGCAAAGTTGAGCCT
CAAGAAAGAGATGAATTTAATGCATTTTAA
Protein sequenceShow/hide protein sequence
MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKS
VENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ