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CmaCh04G019800 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019800
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationCma_Chr04:11593417..11594947
RNA-Seq ExpressionCmaCh04G019800
SyntenyCmaCh04G019800
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0009521 - photosystem (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR036001 - Photosystem antenna protein-like superfamily
IPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1706430.1 unnamed protein product [Brassica napus]1.6e-2260Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESF
        VA LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                 +++ +             + VLGFG +YHALLGPETLEESF
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESF

Query:  PFFGYVWKDR
        PFFGYVWKDR
Subjt:  PFFGYVWKDR

KAB8831628.1 hypothetical protein FH972_026756 [Carpinus fangiana]1.6e-2248.39Show/hide
Query:  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL----------------------
        +V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R       +WW     L  L  +L                      
Subjt:  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL----------------------

Query:  --EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
           +  E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  --EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

KAE8037464.1 hypothetical protein FH972_010051 [Carpinus fangiana]2.1e-2248.7Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R       +WW     L  L  +L                       
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------

Query:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
          +  E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

KAG8363205.1 hypothetical protein BUALT_BualtPtG0001800 [Buddleja alternifolia]2.1e-2248.7Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R       +WW     L  L  +L                       
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------

Query:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
          +  E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

RZC64931.1 hypothetical protein C5167_008620 [Papaver somniferum]5.6e-2350.7Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT----------------------LLYPESSL----------NRRSWWRSYRHLFVLCVR
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                      L++PE  L             +WW     L  L   
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT----------------------LLYPESSL----------NRRSWWRSYRHLFVLCVR

Query:  LEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
                  +VLGFG +YH+LLGPETLEESFPFFGYVWKDR
Subjt:  LEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

TrEMBL top hitse value%identityAlignment
A0A251VHA9 Putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like protein2.1e-2363.39Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEE
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E     R+W  +          L +  E  P  +LGFG +YHALLGPETLEE
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEE

Query:  SFPFFGYVWKDR
        SFPFFGYVWKDR
Subjt:  SFPFFGYVWKDR

A0A4Y7JY71 Uncharacterized protein2.7e-2350.7Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT----------------------LLYPESSL----------NRRSWWRSYRHLFVLCVR
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                      L++PE  L             +WW     L  L   
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT----------------------LLYPESSL----------NRRSWWRSYRHLFVLCVR

Query:  LEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
                  +VLGFG +YH+LLGPETLEESFPFFGYVWKDR
Subjt:  LEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A0A5N6L5A4 Uncharacterized protein7.9e-2348.39Show/hide
Query:  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL----------------------
        +V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R       +WW     L  L  +L                      
Subjt:  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL----------------------

Query:  --EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
           +  E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  --EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A0A660KNR0 Photosystem II D2 protein1.0e-2248.7Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R       +WW     L  L  +L                       
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR------SWWRSYRHLFVLCVRL-----------------------

Query:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
          +  E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  -EYFTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A0A6B9V8M8 Photosystem II D2 protein3.0e-2249.01Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPE---SSLNRRSWWRSYRHLFVLCVRL------------------------EY
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E         +WW     L  L  +L                         +
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPE---SSLNRRSWWRSYRHLFVLCVRL------------------------EY

Query:  FTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
          E P             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  FTEFP------------PSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

SwissProt top hitse value%identityAlignment
A1E9Z4 Photosystem II CP43 reaction center protein6.1e-1293.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A4QJB1 Photosystem II CP43 reaction center protein6.1e-1293.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A4QJJ5 Photosystem II CP43 reaction center protein6.1e-1293.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

A9LYI1 Photosystem II CP43 reaction center protein6.1e-1293.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

Q3V538 Photosystem II CP43 reaction center protein6.1e-1293.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

Arabidopsis top hitse value%identityAlignment
ATCG00270.1 photosystem II reaction center protein D3.6e-1285.71Show/hide
Query:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT
        V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT
Subjt:  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT

ATCG00280.1 photosystem II reaction center protein C4.3e-1393.94Show/hide
Query:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
        SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Subjt:  SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATG
GCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATA
CCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCT
GCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATG
GCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATA
CCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCT
GCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG
Protein sequenceShow/hide protein sequence
MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPS
AVLGFGAMYHALLGPETLEESFPFFGYVWKDR