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CmaCh04G019830 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019830
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II D2 protein, putative
Genome locationCma_Chr04:11626483..11627487
RNA-Seq ExpressionCmaCh04G019830
SyntenyCmaCh04G019830
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0005622 - intracellular (cellular component)
GO:0016020 - membrane (cellular component)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000484 - Photosynthetic reaction centre, L/M
IPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDY29457.1 BnaC05g32130D [Brassica napus]9.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

CDY39486.1 BnaC03g60960D [Brassica napus]9.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

RWR97912.1 putative Photosystem II D2 protein [Cinnamomum micranthum f. kanehirae]2.2e-3952.88Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+G+ TK+ ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SA+GVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

TQD83237.1 hypothetical protein C1H46_031200 [Malus baccata]3.7e-3953.37Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNL AYDF  QEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

VDD65225.1 unnamed protein product [Brassica oleracea]9.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

TrEMBL top hitse value%identityAlignment
A0A078EKT7 BnaC05g32120D protein4.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

A0A078HPI2 BnaC03g60960D protein4.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

A0A3P6DR44 Uncharacterized protein4.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

A0A3P6H9V0 Uncharacterized protein4.7e-4053.85Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

A0A3S3PBZ6 Putative Photosystem II D2 protein1.0e-3952.88Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR
        MTIA+G+ TK+ ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                        GVLGAA 
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT---------------------------------------VGVLGAAR

Query:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED
        LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SA+GVVGLALNLRAYDF SQEIRAA ED
Subjt:  LCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYDFGSQEIRAARED

Query:  PEFETFGT
        PEFETF T
Subjt:  PEFETFGT

SwissProt top hitse value%identityAlignment
B2XWK0 Photosystem II D2 protein8.6e-3135.62Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIA+GK+TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF AVGGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT

Q2MIA5 Photosystem II D2 protein6.6e-3135.62Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIA+GK TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF AVGGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT

Q2MIJ2 Photosystem II D2 protein6.6e-3135.62Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIA+GK TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF AVGGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT

Q2VEI1 Photosystem II D2 protein6.6e-3135.62Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIA+GK TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF AVGGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT

Q4VZN8 Photosystem II D2 protein5.0e-3135.94Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIAVGK TKD ND  F+IMDD LRRDRF  VGWSGLLLFPCAYF AVGGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT

Arabidopsis top hitse value%identityAlignment
ATCG00270.1 photosystem II reaction center protein D8.8e-3135Show/hide
Query:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------
        MTIA+GK TKD  D  F+IMDD LRRDRF  VGWSGLLLFPCAYF A+GGWFT                                               
Subjt:  MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFT-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD
             GVLGAA LCAIHGATVEN LFE                        ANRFW QIFGVAFS K           VT LW SALGVVGLALNLRAYD
Subjt:  ----VGVLGAARLCAIHGATVENPLFEGS---------------------CANRFWYQIFGVAFSTK-----------VTALWPSALGVVGLALNLRAYD

Query:  FGSQEIRAAREDPEFETFGT
        F SQEIRAA EDPEFETF T
Subjt:  FGSQEIRAAREDPEFETFGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGGTTGGTCT
GGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTAGGAGGTTGGTTTACAGTAGGTGTATTGGGCGCTGCTCGGCTATGCGCTATTCATGGTGCTACCGTA
GAAAATCCCTTATTTGAAGGATCATGTGCTAACCGCTTTTGGTACCAAATCTTTGGGGTTGCTTTTTCCACTAAAGTAACTGCTTTATGGCCGAGTGCTCTTGGA
GTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGAAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCGGTACCCTACTATAC
CCAGAATCTTCTCTTAACCGAAGGTATTCGTCCTTGGATGGCGGCTCAAGATCAGCCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGGTTGGTCT
GGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTAGGAGGTTGGTTTACAGTAGGTGTATTGGGCGCTGCTCGGCTATGCGCTATTCATGGTGCTACCGTA
GAAAATCCCTTATTTGAAGGATCATGTGCTAACCGCTTTTGGTACCAAATCTTTGGGGTTGCTTTTTCCACTAAAGTAACTGCTTTATGGCCGAGTGCTCTTGGA
GTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGAAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCGGTACCCTACTATAC
CCAGAATCTTCTCTTAACCGAAGGTATTCGTCCTTGGATGGCGGCTCAAGATCAGCCTCATGA
Protein sequenceShow/hide protein sequence
MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVGWSGLLLFPCAYFVAVGGWFTVGVLGAARLCAIHGATVENPLFEGSCANRFWYQIFGVAFSTKVTALWPSALG
VVGLALNLRAYDFGSQEIRAAREDPEFETFGTLLYPESSLNRRYSSLDGGSRSAS