CuGenDBv2

Gene ID	CmaCh04G019840
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II CP43 reaction center protein
Genome location	Cma_Chr04:11627548..11628820
RNA-Seq Expression	CmaCh04G019840
Synteny	CmaCh04G019840
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009521 - photosystem (cellular component) GO:0016168 - chlorophyll binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG9438488.1 hypothetical protein H6P81_021569 [Aristolochia fimbriata]

1.5e-18

45.73

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVLAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL
         SAVLGFG +YHAL+GP TLEESFPFFGY         +   IL AYMIPG  G     KI NL
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVLAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL

KAG9438608.1 hypothetical protein H6P81_021450 [Aristolochia fimbriata]

9.7e-18

46.1

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVLAFLLVFKAPYLILEAYMIPGLRG
         SAVLGFG +YHAL+GP TLEESFPFFGY         +   IL AYMIPG  G
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVLAFLLVFKAPYLILEAYMIPGLRG

KQK20682.1 hypothetical protein BRADI_1g70724v3 [Brachypodium distachyon]

4.4e-18

44.44

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEV+D         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYV-------LAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL
         SAVLGFG +YHALLGP TLEESFPFFGYV          L +      IL  YMIPG  G     KI NL
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYV-------LAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL

Q09MI2.1 RecName: Full=Photosystem II CP43 reaction center protein; AltName: Full=PSII 43 kDa protein; AltName: Full=Protein CP-43; Flags: Precursor [Citrus sinensis]

3.3e-18

42.11

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y   + + +  PG  G EM  KI NL  +  P  I     
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS

Query:  FRFFHFRGW
          FF   GW
Subjt:  FRFFHFRGW

YP_740471.2 photosystem II CP43 chlorophyll apoprotein [Citrus sinensis]

3.3e-18

42.11

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y   + + +  PG  G EM  KI NL  +  P  I     
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS

Query:  FRFFHFRGW
          FF   GW
Subjt:  FRFFHFRGW

TrEMBL top hits

e value

%identity

Alignment

A0A0Q3S6A4 Uncharacterized protein

2.1e-18

44.44

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEV+D         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYV-------LAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL
         SAVLGFG +YHALLGP TLEESFPFFGYV          L +      IL  YMIPG  G     KI NL
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYV-------LAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNL

A0A411JYE4 Photosystem II CP43 reaction center protein

4.7e-18

45.06

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Query:  HDQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EF
        HDQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWG+GPGGEVID         YF       
Subjt:  HDQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EF

Query:  PPSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
          SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PPSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

A0A411K5K5 Photosystem II CP43 reaction center protein

4.7e-18

45.06

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Query:  HDQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EF
        HDQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWG+GPGGEVID         YF       
Subjt:  HDQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EF

Query:  PPSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
          SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PPSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

A0A4P8F486 Photosystem II CP43 reaction center protein

8.0e-18

45.68

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA YL
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL

V9Z7L8 Photosystem II CP43 reaction center protein (Fragment)

8.0e-18

45.86

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFTEFPPSAV
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID  I    +        SAV
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFTEFPPSAV

Query:  LGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
        LGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  LGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

SwissProt top hits

e value

%identity

Alignment

A9LYI1 Photosystem II CP43 reaction center protein

8.3e-20

45.34

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

B2LMI9 Photosystem II CP43 reaction center protein

6.3e-20

45.34

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

B5LMM0 Photosystem II CP43 reaction center protein

4.8e-20

45.34

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

Q09MI2 Photosystem II CP43 reaction center protein

4.4e-21

42.11

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y   + + +  PG  G EM  KI NL  +  P  I     
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPYL--ILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRS

Query:  FRFFHFRGW
          FF   GW
Subjt:  FRFFHFRGW

Q9BBT1 Photosystem II CP43 reaction center protein

4.8e-20

45.34

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

5.9e-21

45.34

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Query:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP
        DQE   FAW AGNARLI+LSG+      + +      +  MN  E     P  P Y          +TLGWGVGPGGEVID         YF        
Subjt:  DQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSP--PSYSN--------STLGWGVGPGGEVIDLSILCVHLEYFT----EFP

Query:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY
         SAVLGFG +YHALLGP TLEESFPFFGYV                     AFLLVFKA Y
Subjt:  PSAVLGFGAMYHALLGPVTLEESFPFFGYVL--------------------AFLLVFKAPY

Sequences

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CDS sequence

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ATGGAACTTTCTAGCTGGTGTCATGACCAAGAACCGGTTTGTTTCGCTTGGTGTGCCGGAAATGCCCGACTTATCCATTTATCCGGCCGGAGCAATGAACCTATT
CGAAGTGGCTCATTTCGTACCCGAGAAAGAAGCCCATGCATGAACAAGGATGAATTTGACTTCGATTCCCCACCTAGCTACTCTAACTCTACTTTAGGTTGGGGC
GTAGGTCCTGGTGGAGAAGTTATAGACCTTTCCATACTTTGTGTCCATCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTAT
CATGCACTTCTGGGACCCGTGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGCTTGCTTTTCTTCTAGTATTCAAAGCTCCTTACCTGATTTTGGAGGCG
TATATGATACCTGGGCTCCGGGGGGAGGAGATGCAAGCAAAGATATACAACCTTGGCAACAACGACGTTCCGCAGAATATATGCCCCATGCGCTCCTTTAGGTTC
TTTCACTTCCGGGGGTGGCGTAGCTACCGAAATTCATGCAGTCAATTATGTCTCTCCTAG

mRNA sequence

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Protein sequence

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MELSSWCHDQEPVCFAWCAGNARLIHLSGRSNEPIRSGSFRTRERSPCMNKDEFDFDSPPSYSNSTLGWGVGPGGEVIDLSILCVHLEYFTEFPPSAVLGFGAMY
HALLGPVTLEESFPFFGYVLAFLLVFKAPYLILEAYMIPGLRGEEMQAKIYNLGNNDVPQNICPMRSFRFFHFRGWRSYRNSCSQLCLS

CmaCh04G019840 (gene) of Cucurbita maxima (Rimu) v1.1 genome