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CmaCh04G019860 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G019860
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal protein S13
Genome locationCma_Chr04:11698071..11701007
RNA-Seq ExpressionCmaCh04G019860
SyntenyCmaCh04G019860
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEN56112.1 ribosomal protein S13 [Cucumis melo subsp. melo]4.9e-1781.36Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

AUD38512.1 ribosomal protein S13 [Alberta magna]6.4e-1779.66Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

GEW97726.1 ribosomal protein S13, mitochondrial [Tanacetum cinerariifolium]1.2e-2653.46Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCYL-------NELILMLGLVASEFGNEISLPKALDHE------
        K I +  +   SGNIKIKELTK QIDQIEQMI Q H+VHWELKRGER DIER IS+SCY        + LILMLGLVAS+FGN+ SLPKALD E      
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCYL-------NELILMLGLVASEFGNEISLPKALDHE------

Query:  ----------VSSSDKDVSDVI--------------------EAKERCFPSVKSRYRPP
                   SSS+KDVSD                        KE CF SVKSRYRPP
Subjt:  ----------VSSSDKDVSDVI--------------------EAKERCFPSVKSRYRPP

QWX88149.1 ribosomal protein S13 [Indigofera tinctoria]2.2e-1779.66Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTKSQIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

YP_009913633.1 ribosomal protein S13 [Luffa acutangula]8.4e-1779.66Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFIS+SCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

TrEMBL top hitse value%identityAlignment
A0A2H4WYV5 Ribosomal protein S133.1e-1779.66Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

A0A3S9JII2 Ribosomal protein S132.4e-1781.36Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

A0A7D6C5F5 Ribosomal protein S134.1e-1779.66Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFIS+SCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

D5I3H3 Ribosomal protein S134.1e-1781.36Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGER DIER ISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

G3EU28 Ribosomal protein S132.4e-1781.36Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFISLSCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

SwissProt top hitse value%identityAlignment
P05488 Ribosomal protein S13, mitochondrial7.1e-1976.27Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIER IS+SCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

P08834 NADH-ubiquinone oxidoreductase chain 11.3e-1763.74Show/hide
Query:  VIEAKERCFPSVKSRYRPP-----MLPKSAYRGRTGARASWVGVKSQ---------------------ALRSAAQMVPYEVSIGLILIVRL
        VIEAKERCFPSVKSRYRPP      LP++  +GRTGARASWVGVKS+                     ALRSAAQMVPYEVSIGLILIVRL
Subjt:  VIEAKERCFPSVKSRYRPP-----MLPKSAYRGRTGARASWVGVKSQ---------------------ALRSAAQMVPYEVSIGLILIVRL

P08977 Ribosomal protein S13, mitochondrial1.9e-1672.88Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I+L  +   SGNIKI ELTK QIDQIEQMI QDH+VHWELKRGER DIER IS+S Y
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

P15758 Ribosomal protein S13, mitochondrial3.9e-1774.55Show/hide
Query:  LDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        + ++    GNIK KELTK QIDQIEQM GQDH+VHWELKRGER DIERFIS+SCY
Subjt:  LDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

P23209 Ribosomal protein S13, mitochondrial4.2e-1976.27Show/hide
Query:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY
        K I++  +   SGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGER DIERFIS+SCY
Subjt:  KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGCTAGATCAGTTACCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATTGAATTGGACCTAAAAAAGCCATTCAGTGGGAACATCAAGATCAAAGAGTTAACTAA
GTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGTAGACATCGAACGATTCATTTCTCTTTCTTGTT
ATCTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGAAATCAGTCTACCGAAAGCCCTTGACCACGAAGTCTCCTCCTCAGATAAAGATGTC
TCCGATGTAATAGAAGCGAAGGAGAGATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCCGCTTACCGAGGAAGAACTGGAGCCAGAGCTAG
TTGGGTTGGGGTAAAGAGCCAAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCGCCTTAAACTAATCGAGCTCTGTT
TGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAG
mRNA sequenceShow/hide mRNA sequence
GAGCTAGATCAGTTACCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATTGAATTGGACCTAAAAAAGCCATTCAGTGGGAACATCAAGATCAAAGAGTTAACTAA
GTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGTAGACATCGAACGATTCATTTCTCTTTCTTGTT
ATCTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGAAATCAGTCTACCGAAAGCCCTTGACCACGAAGTCTCCTCCTCAGATAAAGATGTC
TCCGATGTAATAGAAGCGAAGGAGAGATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCCGCTTACCGAGGAAGAACTGGAGCCAGAGCTAG
TTGGGTTGGGGTAAAGAGCCAAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCGCCTTAAACTAATCGAGCTCTGTT
TGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAG
Protein sequenceShow/hide protein sequence
ELDQLPINKSELPQPKLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCYLNELILMLGLVASEFGNEISLPKALDHEVSSSDKDV
SDVIEAKERCFPSVKSRYRPPMLPKSAYRGRTGARASWVGVKSQALRSAAQMVPYEVSIGLILIVRLKLIELCLISQKRKLNQLQAIM