CuGenDBv2

Gene ID	CmaCh04G019940
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	Cma_Chr04:11842927..11843420
RNA-Seq Expression	CmaCh04G019940
Synteny	CmaCh04G019940
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0005737 - cytoplasm (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043229 - intracellular organelle (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR006243 - Photosystem I PsaA IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAD1835862.1 unnamed protein product [Ananas comosus var. bracteatus]

2.8e-28

58.91

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------WKMQSDVWSSVS
        APG TT TSLTWGGG+L+AVGGKVALLPIP+G AD LVHH  AFTIHVT                                       WKMQSDVW ++S
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------WKMQSDVWSSVS

Query:  DQGVVTHITGGNFAQSSIITINGRLRDFL
        DQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  DQGVVTHITGGNFAQSSIITINGRLRDFL

YP_009447450.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima]

5.4e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

YP_009751738.1 photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum]

5.4e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

YP_009752243.1 photosystem I P700 apoprotein A1 [Trichosanthes baviensis]

5.4e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

YP_009753174.1 photosystem I P700 apoprotein A1 [Trichosanthes truncata]

5.4e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1T9 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

A0A218KG56 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

A0A249RZM5 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

A0A410HF85 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-27

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

A0A6V7PYA1 Uncharacterized protein

1.4e-28

58.91

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------WKMQSDVWSSVS
        APG TT TSLTWGGG+L+AVGGKVALLPIP+G AD LVHH  AFTIHVT                                       WKMQSDVW ++S
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------WKMQSDVWSSVS

Query:  DQGVVTHITGGNFAQSSIITINGRLRDFL
        DQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  DQGVVTHITGGNFAQSSIITINGRLRDFL

SwissProt top hits

e value

%identity

Alignment

P58310 Photosystem I P700 chlorophyll a apoprotein A1

4.6e-29

50.97

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVG KVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW S+SDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Q0G9W2 Photosystem I P700 chlorophyll a apoprotein A1

4.6e-29

50.97

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TT TSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW S+SDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

7.0e-30

52.26

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TTGTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW SVSDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Q68S06 Photosystem I P700 chlorophyll a apoprotein A1

4.6e-29

50.97

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG TT TSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW S+SDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Q6EW48 Photosystem I P700 chlorophyll a apoprotein A1

3.5e-29

50.97

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG T GTSLTWGGGDLVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW S+SDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00350.1 Photosystem I, PsaA/PsaB protein

3.6e-29

49.68

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Query:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------
        APG T  TSLTWGGG+LVAVGGKVALLPIP+G AD LVHH  AFTIHVT                                                   
Subjt:  APGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVT---------------------------------------------------

Query:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL
                      WKMQSDVW S+SDQGVVTHITGGNFAQSS ITING LRDFL
Subjt:  --------------WKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

Sequences

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CDS sequence

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ATGGCCCCAGGTCCAACAACAGGCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTGGCTTTGTTACCTATTCCGGTAGGAGCCGCAGATTC
TTTGGTACATCATAGTCAGGCATTTACGATTCATGTAACGTGGAAAATGCAGTCAGATGTTTGGAGTAGTGTAAGTGATCAAGGGGTAGTAACTCATATTACGGGAGGAA
ACTTTGCGCAGAGTTCCATCATTACTATTAATGGGAGGCTTCGCGATTTCTTATAG

mRNA sequence

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Protein sequence

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MAPGPTTGTSLTWGGGDLVAVGGKVALLPIPVGAADSLVHHSQAFTIHVTWKMQSDVWSSVSDQGVVTHITGGNFAQSSIITINGRLRDFL

CmaCh04G019940 (gene) of Cucurbita maxima (Rimu) v1.1 genome