CuGenDBv2

Gene ID	CmaCh04G020260
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Gag/pol protein
Genome location	Cma_Chr04:12854914..12856412
RNA-Seq Expression	CmaCh04G020260
Synteny	CmaCh04G020260
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.2e-65

88.19

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-10

89.19

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD
        M+LEMESMYFNSVWELVD P+GVKPI CKWIYKRKRD
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.2e-65

88.19

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-66

88.89

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNEGA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0062799.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-71

55.43

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------
        MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                                                                
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------

Query:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT
                                        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+VWLRKFL DLEV+PNM   +T
Subjt:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT

Query:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        LYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDVIVTQI L HN+ DPFTKPLTAKVFEGHL SLGLR M
Subjt:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

TYJ96755.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-71

55.43

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------
        MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                                                                
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------

Query:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT
                                        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+VWLRKFL DLEV+PNM   +T
Subjt:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT

Query:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        LYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDVIVTQI L HN+ DPFTKPLTAKVFEGHL SLGLR M
Subjt:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZD0 Gag/pol protein

5.7e-66

88.19

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5A7TZD0 Gag/pol protein

1.2e-10

89.19

Show/hide

Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD
        M+LEMESMYFNSVWELVD P+GVKPI CKWIYKRKRD
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD

A0A5A7TZD0 Gag/pol protein

5.7e-66

88.19

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5A7UYE8 Gag/pol protein

1.2e-10

89.19

Show/hide

Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD
        M+LEMESMYFNSVWELVD P+GVKPI CKWIYKRKRD
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD

A0A5A7V1F5 Gag/pol protein

1.5e-66

88.89

Show/hide

Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNEGA++WRSIKQGCI+DSTMEAEYVAACEAAKE+VWLRKFL DLEV+PNM+L +TLYCDNSGAV NSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        EIVQRGDVIVT+I  EHNIADPFTK LTAKVFEGHL SLGLR M
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5A7VB15 Gag/pol protein

9.1e-72

55.43

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------
        MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                                                                
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------

Query:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT
                                        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+VWLRKFL DLEV+PNM   +T
Subjt:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT

Query:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        LYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDVIVTQI L HN+ DPFTKPLTAKVFEGHL SLGLR M
Subjt:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5D3BE74 Gag/pol protein

9.1e-72

55.43

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------
        MNLE+ESMYFNSVW+LVDQ DGVKPI CKW YKRKR                                                                
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKR----------------------------------------------------------------

Query:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT
                                        DSRKSTSGSVFTLN GA++WRSIKQGCI+DSTMEAEY+AACEAAKE+VWLRKFL DLEV+PNM   +T
Subjt:  -----------------------------DQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVT

Query:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        LYCDNSGAV NS+EPRSHKRGKHIERKYHLIREI  RGDVIVTQI L HN+ DPFTKPLTAKVFEGHL SLGLR M
Subjt:  LYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.8e-20

38.57

Show/hide

Query:  RKSTSGSVFTLNE-GAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIRE
        RKST+G +F + +   I W + +Q  ++ S+ EAEY+A  EA +E++WL+  LT + +   +   + +Y DN G ++ +  P  HKR KHI+ KYH  RE
Subjt:  RKSTSGSVFTLNE-GAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIRE

Query:  IVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGL
         VQ   + +  I  E+ +AD FTKPL A  F      LGL
Subjt:  IVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGL

P0CV72 Secreted RxLR effector protein 161

7.6e-07

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Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWL
        +SR+STSG +F LN G + WRS KQ  ++ S+ E EY+A  EA +E+VWL
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.7e-22

42.11

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Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        D+RKS++G +FT + GAI W+S  Q C++ ST EAEY+AA E  KE +WL++FL +L +    ++   +YCD+  A+  SK    H R KHI+ +YH IR
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFE
        E+V    + V +I    N AD  TK +    FE
Subjt:  EIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-03

45.95

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Query:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD
        M  EMES+  N  ++LV+ P G +P+ CKW++K K+D
Subjt:  MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRD

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.1e-12

38.61

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Query:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR
        D+R+ST+G    L    I W+S KQ  +S S+ EAEY A   A  E +WL +F  +L++  +   L  L+CDN+ A+  +     H+R KHIE   H +R
Subjt:  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIR

Query:  E
        E
Subjt:  E

Sequences

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CDS sequence

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ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGA
CCAAACCGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGG
CTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGT
GATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGT
GATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGT
AA

mRNA sequence

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Protein sequence

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MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYC
DNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM

CmaCh04G020260 (gene) of Cucurbita maxima (Rimu) v1.1 genome