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CmaCh04G020760 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G020760
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationCma_Chr04:14133090..14133530
RNA-Seq ExpressionCmaCh04G020760
SyntenyCmaCh04G020760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]1.0e-7596.67Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RR ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-7697.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_022963063.1 uncharacterized protein LOC111463373 [Cucurbita moschata]1.9e-7495.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_022971824.1 uncharacterized protein LOC111470493 [Cucurbita maxima]3.7e-78100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT

Query:  PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]6.5e-7596Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDES+ EINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein4.6e-5877.12Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRR+LP+ K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP

Query:  IRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
         RNVTPVC   +E+G +G  GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Subjt:  IRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A5D3BMD8 Uncharacterized protein6.0e-5877.42Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR-----RALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAA
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RR     RALP+ KKRDDHK LSRSNTLKDLFVSSPPY  +D +++ET   
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR-----RALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAA

Query:  APIRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        AP +N TPVC   +E+G +G  GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Subjt:  APIRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1DFV6 uncharacterized protein LOC1110200642.9e-6082.24Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  R-NVTPVCRE-EDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  R-NVTPVCRE-EDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633739.2e-7595.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704931.8e-78100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT

Query:  PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown7.3e-1642.33Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPD--------KKRDDHKDLSRSNTLKDLFVSSPPYDESDG--------
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R LP+        KK D    +  S  L DLFVSSPP++ES G        
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPD--------KKRDDHKDLSRSNTLKDLFVSSPPYDESDG--------

Query:  --EINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
          E+ E     P+  V+      +          GS RP  +      LLR++WRP+L  IPE
Subjt:  --EINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

AT1G68430.1 unknown protein6.6e-1742.95Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GEINET
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLL+  S  RR         HKD++    LKDLFVSS   +E         G+  E 
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GEINET

Query:  VAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        V AA    +    R +               P W GF  K LL++ WRP L  I E
Subjt:  VAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

AT5G16200.1 50S ribosomal protein-related1.7e-0937.36Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRRAL--------------PDKKRDDHKDLSRSNTLKDLFVS--SPP
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S +RRR L               +KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRRAL--------------PDKKRDDHKDLSRSNTLKDLFVS--SPP

Query:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTG----FRYKYLLRKTWRPLLAGIPE
        Y   ++ DG   E    +P+ NVT      +G+    G    + R G +G    FR + +LRK WRP+L  IPE
Subjt:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTG----FRYKYLLRKTWRPLLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGT
TCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATT
GGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGT
TCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATT
GGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTA
A
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEI
GPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE