CuGenDBv2

Gene ID	CmaCh04G021400
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	THO complex subunit 2
Genome location	Cma_Chr04:14973615..14975479
RNA-Seq Expression	CmaCh04G021400
Synteny	CmaCh04G021400
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006397 - mRNA processing (biological process) GO:0006406 - mRNA export from nucleus (biological process) GO:0000445 - THO complex part of transcription export complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR040007 - THO complex subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601890.1 THO complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

KAG7032587.1 THO complex subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-51

99.03

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCK ALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LST
        LST
Subjt:  LST

XP_022991162.1 THO complex subunit 2-like isoform X1 [Cucurbita maxima]

4.9e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

XP_022991163.1 THO complex subunit 2-like isoform X2 [Cucurbita maxima]

4.9e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

XP_022991164.1 THO complex subunit 2-like isoform X3 [Cucurbita maxima]

4.9e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1H2K5 THO complex subunit 2

6.9e-51

98.04

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCK ALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

A0A6J1H5V5 THO complex subunit 2

6.9e-51

98.04

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCK ALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

A0A6J1JL03 THO complex subunit 2

2.4e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

A0A6J1JU22 THO complex subunit 2

2.4e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

A0A6J1JVD8 THO complex subunit 2

2.4e-51

99.02

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Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

SwissProt top hits

e value

%identity

Alignment

F4IAT2 THO complex subunit 2

1.0e-30

60.78

Show/hide

Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        M+LP LEC YV E  +RE K+GN   ++P+ VP+LRFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T+ G+ R RL+K
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

Arabidopsis top hits

e value

%identity

Alignment

AT1G24706.1 THO2

7.1e-32

60.78

Show/hide

Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        M+LP LEC YV E  +RE K+GN   ++P+ VP+LRFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T+ G+ R RL+K
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

AT1G24706.2 THO2

7.1e-32

60.78

Show/hide

Query:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK
        M+LP LEC YV E  +RE K+GN   ++P+ VP+LRFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T+ G+ R RL+K
Subjt:  MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLK

Query:  LS
        L+
Subjt:  LS

Sequences

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CDS sequence

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ATGGCTCTCCCTCCTCTTGAGTGTATGTATGTCGTTGAAAGCAATCTTCGCGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCCAACCCTGTCCCTGTGCTTCGCTT
CCTTTACGAGCTTTGCTGGACCATGGTTCGAGGTGAATTGCCGTTCCAGAAGTGTAAAGCAGCATTGGATTCAGTAGAGTTCACGGACAAAATGTCTGCGGAGGAGTTAG
GATCGAGTTTTGCTGATGTCATTACCCAATTGGCCCAAGATATCACATTACCCGGAGAGTATCGTGTTCGTCTTTTAAAATTGAGCACTGCAAATAAGGGATTCTTATGA

mRNA sequence

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TTAACCCCTGTACACTGCTCCTTCCTTCACAATTCTTAAAAAATCTCAAACCCTAATTTATCTGGTACGGTCATACTAAAACCCCATGAAAACCCCATTGACTGGCGTTC
TGTTCTGTTACTCTCCTTTTTGAAGCTGTCCCTGCTCGCAAAACCCAGCTATTTTTTCTTCCGGGGGTCTCTTAAGGGATTGCATAGCCTCTTCCGGCAATGGCTCTCCC
TCCTCTTGAGTGTATGTATGTCGTTGAAAGCAATCTTCGCGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCCAACCCTGTCCCTGTGCTTCGCTTCCTTTACGAGC
TTTGCTGGACCATGGTTCGAGGTGAATTGCCGTTCCAGAAGTGTAAAGCAGCATTGGATTCAGTAGAGTTCACGGACAAAATGTCTGCGGAGGAGTTAGGATCGAGTTTT
GCTGATGTCATTACCCAATTGGCCCAAGATATCACATTACCCGGAGAGTATCGTGTTCGTCTTTTAAAATTGAGCACTGCAAATAAGGGATTCTTATGA

Protein sequence

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MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLSTANKGFL

CmaCh04G021400 (gene) of Cucurbita maxima (Rimu) v1.1 genome