CuGenDBv2

Gene ID	CmaCh04G025880
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	RNA pseudouridine synthase 5
Genome location	Cma_Chr04:17734195..17736536
RNA-Seq Expression	CmaCh04G025880
Synteny	CmaCh04G025880
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578753.1 RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-16

45.59

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV        +    L S  +             P  L   L++        YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK
        YYLHAHQLVL+HP+T+E  +I    P   +++G+S+
Subjt:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK

KAG7033008.1 hypothetical protein SDJN02_07060, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.4e-24

86.36

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Query:  NYMPKRLLIETVHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNEEDQIPNEQKSNGDSKQLP
        N +P     ET+HILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNEEDQIPNEQKSNGDS+QLP
Subjt:  NYMPKRLLIETVHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNEEDQIPNEQKSNGDSKQLP

XP_008465671.1 PREDICTED: RNA pseudouridine synthase 5 isoform X1 [Cucumis melo]

2.0e-16

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS
        P VAQGLYVAT SGKPA  KVNVLE DE+GEHTLVQV        +    L S  +             P  L  E V+        Y++  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEE
        YYLHAHQL+LYHP+TNE+
Subjt:  YYLHAHQLVLYHPRTNEE

XP_022994066.1 RNA pseudouridine synthase 5 [Cucurbita maxima]

2.6e-16

45.59

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV        +    L S  +             P  L   L++        YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK
        YYLHAHQLVL+HP+T+E  +I    P   +++G+S+
Subjt:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK

XP_038889122.1 RNA pseudouridine synthase 5 isoform X1 [Benincasa hispida]

6.7e-17

47.86

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL------------------SRSYQKAKKPVPGDYS
        P VAQGLYVAT SGKPA+ KVNVLE DE+G+HTLVQV           +  + +   LL + +++                      YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL------------------SRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNE
        YYLHAHQLVLYHP+TNE
Subjt:  YYLHAHQLVLYHPRTNE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPE8 RNA pseudouridine synthase 5 isoform X1

9.5e-17

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS
        P VAQGLYVAT SGKPA  KVNVLE DE+GEHTLVQV        +    L S  +             P  L  E V+        Y++  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEE
        YYLHAHQL+LYHP+TNE+
Subjt:  YYLHAHQLVLYHPRTNEE

A0A1S3CPT2 RNA pseudouridine synthase 5 isoform X2

1.2e-16

50.43

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS
        P VAQGLYVAT SGKPA  KVNVLE DE+GEHTLVQV        +    L S  +             P  L  E V+        Y++  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRLLIETVH---ILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNE
        YYLHAHQL+LYHP+TNE
Subjt:  YYLHAHQLVLYHPRTNE

A0A6J1BWD7 RNA pseudouridine synthase 5 isoform X1

1.4e-15

43.07

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL------------------SRSYQKAKKPVPGDYS
        P VAQGLYVATSSGKPAF KV+VLE DE+G +TLVQV           +  + +   LL + +++                      YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL------------------SRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSKQ
        YYLHAHQLVL HPRTNE  +I    P   +++G++++
Subjt:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSKQ

A0A6J1FE06 RNA pseudouridine synthase 5 isoform X1

1.2e-16

45.59

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV        +    L S  +             P  L   L++        YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK
        YYLHAHQLVL+HP+T+E  +I    P   +++G+S+
Subjt:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK

A0A6J1JY31 RNA pseudouridine synthase 5

1.2e-16

45.59

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV        +    L S  +             P  L   L++        YQ+  KPVPGD  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT-------EDFFCLLSCNY------------MPKRL---LIETVHILSRSYQKAKKPVPGDYS

Query:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK
        YYLHAHQLVL+HP+T+E  +I    P   +++G+S+
Subjt:  YYLHAHQLVLYHPRTNEEDQI----PNEQKSNGDSK

SwissProt top hits

e value

%identity

Alignment

Q0DST9 RNA pseudouridine synthase 5

1.7e-10

36.97

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVH--------------------ILSRSYQKAKKPVPGD
        P VA+GLY A SSGKPA  KV VLE  +   HTL+QV           +   Y+   L+ + ++                         Y++  +PVPGD
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVH--------------------ILSRSYQKAKKPVPGD

Query:  YSYYLHAHQLVLYHPRTNE
          Y+LHAH LVL HP TNE
Subjt:  YSYYLHAHQLVLYHPRTNE

Q5M721 RNA pseudouridine synthase 5

8.6e-07

33.93

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL--------------------SRSYQKAKKPVPGD
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+ + +++                        Y++  + VPGD
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL--------------------SRSYQKAKKPVPGD

Query:  YSYYLHAHQLVL
          Y+LHAHQ+ L
Subjt:  YSYYLHAHQLVL

Arabidopsis top hits

e value

%identity

Alignment

AT3G52260.1 Pseudouridine synthase family protein

6.3e-05

62.16

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV

AT3G52260.2 Pseudouridine synthase family protein

6.1e-08

33.93

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL--------------------SRSYQKAKKPVPGD
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+ + +++                        Y++  + VPGD
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHIL--------------------SRSYQKAKKPVPGD

Query:  YSYYLHAHQLVL
          Y+LHAHQ+ L
Subjt:  YSYYLHAHQLVL

AT3G52260.3 Pseudouridine synthase family protein

7.5e-06

31.01

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHILSR--------------------------------
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+  T+   S                                 
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIETVHILSR--------------------------------

Query:  -----SYQKAKKPVPGDYSYYLHAHQLVL
              Y++  + VPGD  Y+LHAHQ+ L
Subjt:  -----SYQKAKKPVPGDYSYYLHAHQLVL

Sequences

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CDS sequence

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ATGGATGCAATACCTGAGGTTGCTCAGGGCCTGTACGTTGCTACTTCCTCAGGGAAACCAGCTTTCAGAAAAGTCAATGTTCTTGAGATAGACGAACGAGGAGAA
CACACTTTGGTCCAGGTCACAGAGGACTTCTTCTGTTTGTTGAGTTGCAATTACATGCCCAAGAGACTTCTGATTGAAACCGTGCACATTCTGTCCAGAAGTTAC
CAAAAGGCTAAGAAACCTGTGCCTGGAGATTATAGCTACTACTTGCACGCACATCAATTGGTCCTTTATCACCCAAGAACCAATGAGGAAGATCAAATTCCAAAT
GAACAGAAATCAAATGGCGATTCCAAACAGCTCCCTTGGTGTAACTGGAATTGA

mRNA sequence

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Protein sequence

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MDAIPEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIETVHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNEEDQIPN
EQKSNGDSKQLPWCNWN

CmaCh04G025880 (gene) of Cucurbita maxima (Rimu) v1.1 genome