; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh04G027280 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G027280
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionmetalloendoproteinase 1-like
Genome locationCma_Chr04:18377738..18378142
RNA-Seq ExpressionCmaCh04G027280
SyntenyCmaCh04G027280
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030198 - extracellular matrix organization (biological process)
GO:0030574 - collagen catabolic process (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002477 - Peptidoglycan binding-like
IPR036365 - PGBD-like superfamily
IPR036366 - PGBD superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602458.1 hypothetical protein SDJN03_07691, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6388.57Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDL+SCLQVMF LVAAIAPHAI+ARHLH HKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NVETKGN FDDNLEFAIKSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS
        DAETLELMSQPRCGVPD        DGNGDRDHPIGLH+S
Subjt:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS

XP_022959850.1 metalloendoproteinase 1-like [Cucurbita moschata]3.6e-6489.29Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDL+SCLQVMFILVAAIAPHAI+ARHLH HKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NVETKGN FDDNLEFAIKSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS
        DAETLELMSQPRCGVPD        DGNGDRDHPIGLH+S
Subjt:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS

XP_022990781.1 metalloendoproteinase 1-like [Cucurbita maxima]1.4e-71100Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI
        DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI
Subjt:  DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI

XP_023544311.1 metalloendoproteinase 1-like [Cucurbita pepo subsp. pepo]1.6e-6489.93Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDLKSCLQVMFILVAAIAPHAI+ARHLHTHKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NV+TKGNAFDDNLEFA+KSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHF
        DAETLELMSQPRCGVPD        DGNGDRDHPIGLH+
Subjt:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHF

XP_023544428.1 metalloendoproteinase 1-like [Cucurbita pepo subsp. pepo]8.9e-6385.21Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDL SCLQVMF+LVAAIAPHAI+ARHLHTHKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NV+T+GNAFDDNLEFA+KSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFSMI
        D ETLELMSQPRCGVPD        DGNGD DHPIGLH++ I
Subjt:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFSMI

TrEMBL top hitse value%identityAlignment
A0A6J1H5Y2 metalloendoproteinase 1-like8.8e-4883.05Show/hide
Query:  VARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD----D
        +ARHLHTHKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NVETKGNAFDDNLEFA+KSYQKFFNLNVSGILDAETL LMSQPRCGVPD    +
Subjt:  VARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD----D

Query:  GNGDR----DHPIGLHFS
         +GDR    DH IGL ++
Subjt:  GNGDR----DHPIGLHFS

A0A6J1H620 metalloendoproteinase 1-like3.4e-5285.83Show/hide
Query:  VARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD-----
        +ARHLHTHKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NVETKGN FDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD     
Subjt:  VARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD-----

Query:  ---DGNGDRDHPIGLHFSMI
           D NGD DHPIGLH++ I
Subjt:  ---DGNGDRDHPIGLHFSMI

A0A6J1H7I1 metalloendoproteinase 1-like1.8e-6489.29Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDL+SCLQVMFILVAAIAPHAI+ARHLH HKL SSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLS NVETKGN FDDNLEFAIKSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS
        DAETLELMSQPRCGVPD        DGNGDRDHPIGLH+S
Subjt:  DAETLELMSQPRCGVPD--------DGNGDRDHPIGLHFS

A0A6J1H7Q4 metalloendoproteinase 1-like6.7e-5692.31Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDLKSCLQ+MFILVAAIAPHAI+ARHLHTHK  SSIFPQHLVGSGKGHN+EGIHNVRAFLQRYGYLS NV+TKGNAFDDNLEFA+KSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPD
        D ETLELMSQPRCGVPD
Subjt:  DAETLELMSQPRCGVPD

A0A6J1JNX3 metalloendoproteinase 1-like6.7e-72100Show/hide
Query:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
        MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL
Subjt:  MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGIL

Query:  DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI
        DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI
Subjt:  DAETLELMSQPRCGVPDDGNGDRDHPIGLHFSMI

SwissProt top hitse value%identityAlignment
O04529 Metalloendoproteinase 2-MMP2.8e-1139.76Show/hide
Query:  HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETK-GNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG
        +  G   G N++G++ ++ + QR+GY+         + FDD L+ A++ YQ  FNLNV+G LDA T++ +  PRCG PD  NG
Subjt:  HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETK-GNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG

O23507 Metalloendoproteinase 1-MMP5.3e-1040.85Show/hide
Query:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD
        G ++ G+  ++ +L R+GY++   E   + FD  LE AI  YQ+   L ++G LD  T+ LMS PRCGV D
Subjt:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD

P29136 Metalloendoproteinase 17.5e-1247.89Show/hide
Query:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD
        G N +G+ NV+ +    GY+ PN     + FDD L  AIK+YQK +NLNV+G  D  TL+ +  PRCGVPD
Subjt:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD

Q5XF51 Metalloendoproteinase 3-MMP5.9e-0931.62Show/hide
Query:  LKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQ--------------HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGN---AFDDNLEFAI
        ++ C+ ++F+L  A +P   V+   +T+   S+I PQ              +  G   G   +G++ ++ + Q +GY++      GN    FDD L+ A+
Subjt:  LKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQ--------------HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGN---AFDDNLEFAI

Query:  KSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG
        + YQ+ F LNV+G+LD  TL+ +  PRCG PD  NG
Subjt:  KSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG

Q9ZUJ5 Metalloendoproteinase 5-MMP1.3e-1145Show/hide
Query:  LVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNA---FDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD
        L G   G NI G+  ++ + +R+GY++    T GN    FDD L+ AI +YQK FNL V+G LD+ TL  + +PRCG PD
Subjt:  LVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNA---FDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD

Arabidopsis top hitse value%identityAlignment
AT1G24140.1 Matrixin family protein4.2e-1031.62Show/hide
Query:  LKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQ--------------HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGN---AFDDNLEFAI
        ++ C+ ++F+L  A +P   V+   +T+   S+I PQ              +  G   G   +G++ ++ + Q +GY++      GN    FDD L+ A+
Subjt:  LKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQ--------------HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGN---AFDDNLEFAI

Query:  KSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG
        + YQ+ F LNV+G+LD  TL+ +  PRCG PD  NG
Subjt:  KSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG

AT1G59970.1 Matrixin family protein9.0e-1345Show/hide
Query:  LVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNA---FDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD
        L G   G NI G+  ++ + +R+GY++    T GN    FDD L+ AI +YQK FNL V+G LD+ TL  + +PRCG PD
Subjt:  LVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNA---FDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD

AT1G70170.1 matrix metalloproteinase2.0e-1239.76Show/hide
Query:  HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETK-GNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG
        +  G   G N++G++ ++ + QR+GY+         + FDD L+ A++ YQ  FNLNV+G LDA T++ +  PRCG PD  NG
Subjt:  HLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETK-GNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDDGNG

AT2G45040.1 Matrixin family protein2.5e-0740.91Show/hide
Query:  IHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDD
        I  ++  LQ+YGYL  N E+     D + E A+  YQK   L ++G  D++TL  +  PRCG PDD
Subjt:  IHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPDD

AT4G16640.1 Matrixin family protein3.8e-1140.85Show/hide
Query:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD
        G ++ G+  ++ +L R+GY++   E   + FD  LE AI  YQ+   L ++G LD  T+ LMS PRCGV D
Subjt:  GHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQPRCGVPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAAATCATGTCTCCAAGTGATGTTCATACTTGTCGCCGCCATAGCACCTCACGCCATCGTGGCGCGCCATCTTCACACCCACAAGTTGCCTTCGTCTATATT
TCCCCAACATCTTGTGGGAAGTGGGAAGGGCCACAACATAGAAGGAATCCACAACGTCAGAGCCTTCCTCCAACGTTATGGTTACTTGAGTCCAAATGTGGAGACCAAAG
GCAACGCCTTTGATGACAACTTGGAGTTTGCCATTAAATCATACCAAAAGTTCTTCAACCTCAACGTGAGTGGCATTTTGGATGCGGAGACTTTGGAGCTAATGTCGCAG
CCTCGATGTGGAGTTCCCGACGACGGGAACGGGGACAGGGATCACCCCATAGGACTTCATTTTTCAATGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAAATCATGTCTCCAAGTGATGTTCATACTTGTCGCCGCCATAGCACCTCACGCCATCGTGGCGCGCCATCTTCACACCCACAAGTTGCCTTCGTCTATATT
TCCCCAACATCTTGTGGGAAGTGGGAAGGGCCACAACATAGAAGGAATCCACAACGTCAGAGCCTTCCTCCAACGTTATGGTTACTTGAGTCCAAATGTGGAGACCAAAG
GCAACGCCTTTGATGACAACTTGGAGTTTGCCATTAAATCATACCAAAAGTTCTTCAACCTCAACGTGAGTGGCATTTTGGATGCGGAGACTTTGGAGCTAATGTCGCAG
CCTCGATGTGGAGTTCCCGACGACGGGAACGGGGACAGGGATCACCCCATAGGACTTCATTTTTCAATGATTTGA
Protein sequenceShow/hide protein sequence
MDLKSCLQVMFILVAAIAPHAIVARHLHTHKLPSSIFPQHLVGSGKGHNIEGIHNVRAFLQRYGYLSPNVETKGNAFDDNLEFAIKSYQKFFNLNVSGILDAETLELMSQ
PRCGVPDDGNGDRDHPIGLHFSMI