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CmaCh04G028780 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G028780
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCma_Chr04:19121502..19124335
RNA-Seq ExpressionCmaCh04G028780
SyntenyCmaCh04G028780
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016032.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-2772.53Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_011656423.1 putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]1.1e-2669.23Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVGHLN AMEF+S MP+EPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_022939229.1 pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata]5.1e-2772.53Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_022993736.1 pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima]5.1e-2772.53Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_023549692.1 pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo]1.1e-2671.43Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M+QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ4 Uncharacterized protein5.5e-2769.23Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVGHLN AMEF+S MP+EPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A5D3C2B1 Pentatricopeptide repeat-containing protein1.9e-2465.93Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M  LG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVG LN AM F+S MP+EPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A6J1BXL8 pentatricopeptide repeat-containing protein At2g33680-like7.9e-2668.13Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG++ NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   +         L  RVG LN A+EF+  MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A6J1FGJ6 pentatricopeptide repeat-containing protein At3g16610-like2.5e-2772.53Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A6J1JX63 pentatricopeptide repeat-containing protein At2g27610-like2.5e-2772.53Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG LN AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

SwissProt top hitse value%identityAlignment
Q9CA73 Putative pentatricopeptide repeat-containing protein At1g744001.1e-1346.99Show/hide
Query:  NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        N VTF+ VL  CSH GLVEEG ++F  M   Y      A       LF R GHL  A EF++ MPI+PN ++W+TLLG C ++
Subjt:  NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Q9LFL5 Pentatricopeptide repeat-containing protein At5g168605.1e-1438.71Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR
        M ++G +L+ VT L VL+ CSH G++++G++YF  MK  +G   G    A    L  R G LN A+  +  MP+EP  +VW   L  CRI+ +
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR

Q9LS72 Pentatricopeptide repeat-containing protein At3g292301.9e-1341.49Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS
        M + G+  + VTF+ VL  C+H GL++EG+ YF  M+         E YG   D  L  RVG L  A++ V TMP+EPN ++W  LLG CR+++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS

Q9LXF2 Pentatricopeptide repeat-containing protein At5g153006.7e-1444.09Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M++L +  N VTF+ V+  CSH G V+EG +YF+LM++          YG   D  +  R G L  A  FV +M IEPN +VW+TLLG C+IY
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307001.3e-1445.98Show/hide
Query:  GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        G+    VTFLCVL+ CSH GLV+EG + F  M   YG     +  A  +    R GHL  A++F+  M IEP   VW+TLLG CRI+
Subjt:  GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Arabidopsis top hitse value%identityAlignment
AT1G74400.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.1e-1546.99Show/hide
Query:  NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        N VTF+ VL  CSH GLVEEG ++F  M   Y      A       LF R GHL  A EF++ MPI+PN ++W+TLLG C ++
Subjt:  NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-1441.49Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS
        M + G+  + VTF+ VL  C+H GL++EG+ YF  M+         E YG   D  L  RVG L  A++ V TMP+EPN ++W  LLG CR+++
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein9.6e-1645.98Show/hide
Query:  GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        G+    VTFLCVL+ CSH GLV+EG + F  M   YG     +  A  +    R GHL  A++F+  M IEP   VW+TLLG CRI+
Subjt:  GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein4.7e-1544.09Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        M++L +  N VTF+ V+  CSH G V+EG +YF+LM++          YG   D  +  R G L  A  FV +M IEPN +VW+TLLG C+IY
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-1538.71Show/hide
Query:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR
        M ++G +L+ VT L VL+ CSH G++++G++YF  MK  +G   G    A    L  R G LN A+  +  MP+EP  +VW   L  CRI+ +
Subjt:  MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAGTTAGGTATGGAGCTCAATGCTGTTACTTTTTTATGTGTTCTATTTGGATGTAGCCATGGAGGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTA
ATGAAGGAAACTTATGGTGGTACCAGAGACGGAGCATTATTCCTTCGTGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAAT
GAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATTCACGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAGTTAGGTATGGAGCTCAATGCTGTTACTTTTTTATGTGTTCTATTTGGATGTAGCCATGGAGGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTA
ATGAAGGAAACTTATGGTGGTACCAGAGACGGAGCATTATTCCTTCGTGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAAT
GAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATTCACGTTAA
Protein sequenceShow/hide protein sequence
MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR