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CmaCh04G028800 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G028800
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCma_Chr04:19124943..19125176
RNA-Seq ExpressionCmaCh04G028800
SyntenyCmaCh04G028800
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016032.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1670.97Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS+LG+DS+ LVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

XP_022134356.1 pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia]3.9e-1879.03Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        + + K  GML DVSKAKEVSH+AS LGVDS+TLVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

XP_022939229.1 pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata]2.8e-1670.97Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS+LG+DS+ LVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

XP_022993736.1 pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima]1.2e-1672.58Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS LG+DS+TLVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

XP_023549692.1 pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo]1.6e-1670.97Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS+LG+DS+TLVGT L+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

TrEMBL top hitse value%identityAlignment
A0A5A7UEQ9 Pentatricopeptide repeat-containing protein9.6e-1569.35Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        + + K  GML DV+KAKEVS +A +LGVDS+TLVGTAL+DMHSKCGSLQEARSIF+ H   C
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

A0A5D3C2B1 Pentatricopeptide repeat-containing protein9.6e-1569.35Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        + + K  GML DV+KAKEVS +A +LGVDS+TLVGTAL+DMHSKCGSLQEARSIF+ H   C
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

A0A6J1BXL8 pentatricopeptide repeat-containing protein At2g33680-like1.9e-1879.03Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        + + K  GML DVSKAKEVSH+AS LGVDS+TLVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

A0A6J1FGJ6 pentatricopeptide repeat-containing protein At3g16610-like1.3e-1670.97Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS+LG+DS+ LVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

A0A6J1JX63 pentatricopeptide repeat-containing protein At2g27610-like6.0e-1772.58Show/hide
Query:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC
        +++ K  GML DV+KAKE+S +AS LG+DS+TLVGTAL+DMHSKCGSLQEARSIFD H TNC
Subjt:  LALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNC

SwissProt top hitse value%identityAlignment
Q38959 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic1.3e-0548.94Show/hide
Query:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        LG +S  + V  +A   G      +GTAL+DM+SKCGSLQ+AR +FD
Subjt:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic2.3e-0550Show/hide
Query:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        +S  KE+  +A   G DS   + TALVDM++KCGSL+ AR +FD
Subjt:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic3.3e-0442.55Show/hide
Query:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        L  ++K KE+  +A    + +   VG+ALVDM++KCG LQ +R +FD
Subjt:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

Q9FXH1 Pentatricopeptide repeat-containing protein At1g197206.6e-0545.45Show/hide
Query:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        +++  EV   A  +G     LVG +LVDM+SKCG L++AR +FD
Subjt:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial8.7e-0538.6Show/hide
Query:  LLALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        ++ L     MLGD+++ KE   +  + G+  +  +  AL+DM SKCG + EAR IFD
Subjt:  LLALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein1.6e-0650Show/hide
Query:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        +S  KE+  +A   G DS   + TALVDM++KCGSL+ AR +FD
Subjt:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.7e-0645.45Show/hide
Query:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        +++  EV   A  +G     LVG +LVDM+SKCG L++AR +FD
Subjt:  VSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

AT2G22410.1 SLOW GROWTH 16.2e-0638.6Show/hide
Query:  LLALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        ++ L     MLGD+++ KE   +  + G+  +  +  AL+DM SKCG + EAR IFD
Subjt:  LLALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

AT3G26630.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.5e-0748.94Show/hide
Query:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        LG +S  + V  +A   G      +GTAL+DM+SKCGSLQ+AR +FD
Subjt:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-0542.55Show/hide
Query:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD
        L  ++K KE+  +A    + +   VG+ALVDM++KCG LQ +R +FD
Subjt:  LGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGGTATGTTAGGAGATGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGACTTAGGTGTGGACTCTAGTAC
TCTTGTGGGAACTGCTCTCGTTGATATGCATTCTAAATGTGGATCTTTGCAAGAGGCAAGATCCATCTTTGACCCTCATTGTACAAATTGTTTGCCAAAATGTGTTTACA
GACAGTGCGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGGGTATGTTAGGAGATGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCAGACTTAGGTGTGGACTCTAGTAC
TCTTGTGGGAACTGCTCTCGTTGATATGCATTCTAAATGTGGATCTTTGCAAGAGGCAAGATCCATCTTTGACCCTCATTGTACAAATTGTTTGCCAAAATGTGTTTACA
GACAGTGCGTGTAA
Protein sequenceShow/hide protein sequence
MHNRLLALQKLWGMLGDVSKAKEVSHFASDLGVDSSTLVGTALVDMHSKCGSLQEARSIFDPHCTNCLPKCVYRQCV