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CmaCh05G002500 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh05G002500
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein RADIALIS-like 4
Genome locationCma_Chr05:1056205..1057976
RNA-Seq ExpressionCmaCh05G002500
SyntenyCmaCh05G002500
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598451.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]6.3e-4598.92Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]4.5e-4387.13Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022951683.1 protein RADIALIS-like 4 [Cucurbita moschata]2.3e-4287.13Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]8.5e-50100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]1.4e-4491.09Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+VY DEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein1.9e-4286.14Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 42.2e-4387.13Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1GIE7 protein RADIALIS-like 41.1e-4287.13Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1HFA3 protein RADIALIS-like 44.1e-50100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 44.1e-50100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.7e-2457.29Show/hide
Query:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYG---DEQRLMKNLKLQ
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+   S G   G    E++ M+N++LQ
Subjt:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYG---DEQRLMKNLKLQ

Q1A173 Protein RADIALIS-like 63.1e-2662.77Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRLMKNLKL
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRLMKNLKL

Q58FS3 Transcription factor RADIALIS1.3e-2153.19Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ
        S+  S   W+ K+NK FE ALA+Y +DTPDRW  VAR V G+T EEVK+HY+ILV+D+ +IESGK+P PNY+   + G +  DE+R  +NLK++
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 56.8e-2661.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ---RLMKNLKLQ
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +       G +    RLMKN+++Q
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ---RLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 29.2e-2354.37Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIV--SNGTVYGDEQRLMKNL
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK     SN     DE++ M+++
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIV--SNGTVYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.9e-2761.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ---RLMKNLKLQ
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +       G +    RLMKN+++Q
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQ---RLMKNLKLQ

AT1G75250.1 RAD-like 63.5e-2563.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

AT1G75250.2 RAD-like 62.2e-2762.77Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRLMKNLKL
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein6.6e-2454.37Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIV--SNGTVYGDEQRLMKNL
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK     SN     DE++ M+++
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIV--SNGTVYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

AT4G39250.1 RAD-like 11.2e-2557.29Show/hide
Query:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYG---DEQRLMKNLKLQ
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+   S G   G    E++ M+N++LQ
Subjt:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYG---DEQRLMKNLKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGGACGCTCTGGCTTTATATCCCGAGGACACACCAGA
CCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATAC
CTCTTCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
AAACGGAGCCCAGGTCTCTTTATTACCATATTTTTTGTTCCGTGCGGCTTTCTTTGCAGCATTTTCACCTACTTAGATCATCATCGCCGTTCAAAGCTTTCCATCCTAAC
TTCATTTATACAATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGGACGCTCTGGCTTTATATCCCGA
GGACACACCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAAT
CTGGAAAGATACCTCTTCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAAAGAAGAGGTATT
ATACCGATGATATAATAAGAGCTGCAGAAGCGTTGTTCTCGATAATTACGAGAATATGCTTGGTGTCAGTGTTTCTCTACTTTCCCGCTCTGTTTGTCCTTTCAAGCATG
TAATGCTAACCTGTGAAGCCAACTAAACTATTGTAAGCCTTAACCTGTTTGTTCAAGTACCCGATAATGCTGCTTTTGTGTACTAGTGTGAGTACTGTTTCATTCGCTTT
CCAATCATTATAAAGGAGCATCTTGCACCCA
Protein sequenceShow/hide protein sequence
MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ