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CmaCh05G012080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh05G012080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPSII 6.1 kDa protein
Genome locationCma_Chr05:9313894..9315006
RNA-Seq ExpressionCmaCh05G012080
SyntenyCmaCh05G012080
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022946133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]1.3e-5392.31Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA +L KMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVGMFGLIWSLYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

XP_022999105.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]1.2e-59100Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

XP_023521165.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]3.9e-5593.08Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA RLPKMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVG+FGLIW+LYFVYASSLDEDDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

XP_023521171.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]1.8e-5593.85Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA RLPKMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVG+FGLIWSLYFVYASSLDEDDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.6e-4679.7Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS SR+LLKGSS +LPSP +AAHRLP   KMK+  IKC+ EEK EGK+SEE +VSGT+AAVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        LGWIL G+F LIW+LYFVYASSLDED+DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein2.4e-4277.61Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKR-SEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNN
        MAS+LL  SR+LLKGSS +L SP MAAHRLP   KMK+  IKC  EEK EGK+ SEE MV GTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKR-SEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        LLGWIL  +F LIW+LYFVYASSLDED+DSGLSL
Subjt:  LLGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein3.9e-4580.45Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LL  SR+LLKGSS +LPS  MAA RLP   KMK   IKCK EEK EGK+SEE MV GTVAAVAMA +AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        LGWIL GMFGLIW+LYFVYASSLDED+DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein7.4e-4476.69Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS S I LKGS  +LP PLMAAHRLP   KMK+  IKCK EEK+EGKRS+E ++SGTVAA+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        LGWIL GMFG IW+LYFVYASSL+ED+DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL

A0A6J1G2Y6 PSII 6.1 kDa protein6.1e-5492.31Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA +L KMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVGMFGLIWSLYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein5.7e-60100Show/hide
Query:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        ILVGMFGLIWSLYFVYASSLDEDDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEDDDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic2.2e-2148.84Show/hide
Query:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI
        AS++ +    LL   ++ + +P++    + K K+  ++C  E K+         VS   AA A  T   + PA+ALVDER+STEGTGLPFGLSNNLLGWI
Subjt:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI

Query:  LVGMFGLIWSLYFVYASSLDEDDDSGLSL
        L G+FGLIW+ +FVY SSL+ED++SGLSL
Subjt:  LVGMFGLIWSLYFVYASSLDEDDDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic1.6e-2250Show/hide
Query:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKM-KRRAIKCKAEEK----REGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNN
        ++SL++ + ++      +  SP++    LP M KR  + C  E K         + + M +  +AA A AT+  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKM-KRRAIKCKAEEK----REGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL
        LLGWIL G+FGLIW+LYFVYAS L+ED++SGLSL
Subjt:  LLGWILVGMFGLIWSLYFVYASSLDEDDDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic2.3e-1848.67Show/hide
Query:  SSMILPSPLMAAHRLPKMK-RRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYF
        +S++  + L     LP+M+ RR+ + +    +E       +     + +AMA  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL+G+FGLIWSLY 
Subjt:  SSMILPSPLMAAHRLPKMK-RRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYF

Query:  VYASSLDEDDDSG
        +Y S L+ED++SG
Subjt:  VYASSLDEDDDSG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic6.8e-1037.72Show/hide
Query:  SPLMAAHRLPKMKRRA---IKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYAS
        +P +AA  + +   R+   + CKA   R     +  M+S   A +      AA PA ALVDER++ +GTG PFG+++ +LGW+L+G+FG +W+++F+   
Subjt:  SPLMAAHRLPKMKRRA---IKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYAS

Query:  SLD--EDDDSGLSL
         L   ED D GL L
Subjt:  SLD--EDDDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.6e-2248.84Show/hide
Query:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI
        AS++ +    LL   ++ + +P++    + K K+  ++C  E K+         VS   AA A  T   + PA+ALVDER+STEGTGLPFGLSNNLLGWI
Subjt:  ASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWI

Query:  LVGMFGLIWSLYFVYASSLDEDDDSGLSL
        L G+FGLIW+ +FVY SSL+ED++SGLSL
Subjt:  LVGMFGLIWSLYFVYASSLDEDDDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCGCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGATTCTTCCATCGCCATTAATGGCAGCTCACAGGTTACCGAAGATGAAGAGG
AGAGCAATAAAGTGCAAGGCAGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTGGCTGCGGTGGCGATGGCTACAATGGCAGCG
GCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATG
TTTGGTTTAATTTGGTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGATGACGACTCTGGTTTGTCACTCTAA
mRNA sequenceShow/hide mRNA sequence
CCAAATTATGTGGTGCACAAAACAAGAACACCTTTCCCCTCAACCTCCAGCAGGTTTTTTTGGCCAGAAAAATGGCGTCCTCGCTGCTTTCTCCTTCCAGGATCT
TACTCAAAGGATCATCCATGATTCTTCCATCGCCATTAATGGCAGCTCACAGGTTACCGAAGATGAAGAGGAGAGCAATAAAGTGCAAGGCAGAGGAGAAGCGAG
AAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTGGCTGCGGTGGCGATGGCTACAATGGCAGCGGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGAT
TGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTTGGTTTAATTTGGTCTCTATACTTTGTTTATG
CTTCGTCCTTAGATGAAGATGACGACTCTGGTTTGTCACTCTAAATCAATCATCACATTTTAATCAAAGTTATGGTTAGTAAAAAAAACACGACTATTATGTAAC
GATTCCTTTTGTAGACCTTCGAGAAAACGAACGGAGAGTGAGA
Protein sequenceShow/hide protein sequence
MASSLLSPSRILLKGSSMILPSPLMAAHRLPKMKRRAIKCKAEEKREGKRSEERMVSGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGM
FGLIWSLYFVYASSLDEDDDSGLSL