; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh06G002020 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G002020
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpentatricopeptide repeat-containing protein At2g38420, mitochondrial
Genome locationCma_Chr06:1038629..1042143
RNA-Seq ExpressionCmaCh06G002020
SyntenyCmaCh06G002020
Gene Ontology termsNA
InterPro domainsIPR002885 - Pentatricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017195.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

XP_022935432.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata]2.4e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

XP_022983450.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima]2.4e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

XP_023527573.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo]2.4e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

XP_038903517.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida]7.1e-0854.55Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF
        HGLCKQGN E GIQM       GCKP+ ITY+ILLE LC  G L      RS+MQLK     L  F
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF

TrEMBL top hitse value%identityAlignment
A0A1S3B651 pentatricopeptide repeat-containing protein At2g38420, mitochondrial7.7e-0851.52Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF
        HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK     L  F
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF

A0A5A7TL23 Pentatricopeptide repeat-containing protein7.7e-0851.52Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF
        HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK     L  F
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF

A0A5D3DN26 Pentatricopeptide repeat-containing protein7.7e-0851.52Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF
        HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK     L  F
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF

A0A6J1F5E3 pentatricopeptide repeat-containing protein At2g38420, mitochondrial1.2e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

A0A6J1IZC4 pentatricopeptide repeat-containing protein At2g38420, mitochondrial1.2e-0861.4Show/hide
Query:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK
        HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Subjt:  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAGCTTTCTGGAACAAAAGAGGCATGGATTATGCAAACAAGGTAATCCAGAAACAGGAATTCAAATGGGGTGCAAACCTGATGCGATTACTTACAGTATTCTCTT
GGAAATGTTGTGTATAATCGGAAACTTGACGACGCAAGGAAGTTTCAGAAGTGAGATGCAGCTAAAGAGGGCTGGCAGATTACTTGCTGGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
TCGATTATTTGATAACGAAGAGGAATCCTCTCGCAGTGAGATGCTTAGCTTTCTGGAACAAAAGAGGCATGGATTATGCAAACAAGGTAATCCAGAAACAGGAATTCAAA
TGGGGTGCAAACCTGATGCGATTACTTACAGTATTCTCTTGGAAATGTTGTGTATAATCGGAAACTTGACGACGCAAGGAAGTTTCAGAAGTGAGATGCAGCTAAAGAGG
GCTGGCAGATTACTTGCTGGCTTTTAGGATTATGAATCATGGTGATGTAATTGAAGCCATTTGAAAGAAATTCTTGGAAGTTGTTTCCCTCGTCAGATTTCAACTTCTGG
TATTGCAACGACAACTTTGTTAACTCGTGTTGTGGTAGACCGGATCGATACTTCACATAACCTTTTGTCTGAAAAAAGAAAGGACGCGCCCTTCCTTTCTATGCAGCTCA
ACCTTCTGGTGGTGTAAATATTTCATAAGTTTCTCCGTGGAAGAAGGAGAAGATTGTGCCACTACAGTGAAACGAGCTAGCTCACATGATACACGAGAGGCTCCACATGT
GTAATAAGTTCAAAAAAGGATGCTAAAAGAGGTTGAAGCTTTCGCATTTGTGTCCATTCGAATTTATTTTGCGCGTGATTCTAAAGATGTGAAGAG
Protein sequenceShow/hide protein sequence
MLSFLEQKRHGLCKQGNPETGIQMGCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF