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CmaCh06G007780 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G007780
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationCma_Chr06:4021984..4022943
RNA-Seq ExpressionCmaCh06G007780
SyntenyCmaCh06G007780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596855.1 Root meristem growth factor 6, partial [Cucurbita argyrosperma subsp. sororia]4.5e-3587.23Show/hide
Query:  MISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        MISPGFR +QL++SLD+S+SN+VSS+ENVGIEILKGMKKLRRLAMELPVRD DR  DKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  MISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-5589.31Show/hide
Query:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
        MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLE CMISPGFR +QL++SLD+S+SN+VSS+ENVGIEILKGMKKLRRLAMELPVRD DR  DKDIDKV
Subjt:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]7.9e-64100Show/hide
Query:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
        MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
Subjt:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]4.2e-5791.6Show/hide
Query:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
        MPMPTS FLALLFLSTFLHACDARLLKLCHSSRLESC+ISPGFR +QL+RSLD+SKSN+VSS+ENVGIEILKGMKKLRRLAMELPVRDRDR  DKDIDKV
Subjt:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]7.5e-2255.73Show/hide
Query:  LFLALLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRMDQLKRSLDKSKSNEVSSVE-NVGIEILKGMKKL-RRLAMELPVRDRDRDKDKDIDKV
        LFL LL  S+ LHAC+AR L+   S    SR+E   IS G   DQ +RS ++S S+++S  E  VGIE+LKGMKK   RL ME P++          +KV
Subjt:  LFLALLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRMDQLKRSLDKSKSNEVSSVE-NVGIEILKGMKKL-RRLAMELPVRDRDRDKDKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        +NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein7.8e-1750.7Show/hide
Query:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCM-----ISPG---FRMDQLKRSLDKSKS-NEVSSVEN-VGIEILKGMKK-LRRLAMELPVRDR
        M MP   FL LLF S+ LHACDA  L+   SS   S +     +S G      DQ + S DK+ + N + + EN +GIE+LKGMK+   RL ME P++  
Subjt:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCM-----ISPG---FRMDQLKRSLDKSKS-NEVSSVEN-VGIEILKGMKK-LRRLAMELPVRDR

Query:  DRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
                +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  DRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

A0A438K320 Uncharacterized protein2.8e-0637.98Show/hide
Query:  SLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGF-RMDQL-KRSLDKSKSNEVSSVENV-GIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVN
        S  L LL LS  +HAC+AR L +      E  ++S      DQ+ K SL       + + E +   +IL G K+  RL +             D+++ V+
Subjt:  SLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGF-RMDQL-KRSLDKSKSNEVSSVENV-GIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNRKP
        S+E ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNRKP

A0A6J1DKL1 uncharacterized protein LOC1110213967.6e-2052.59Show/hide
Query:  MPTSLFLALLFLSTFLHACDA-RLLKLCHSSRLESCM-----ISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKD
        M T   L +L LST LHACDA   L+L   S   S +     I   FR DQ +RSL+K+  ++VSS   +GI ILKGMKK +RLAME  ++++       
Subjt:  MPTSLFLALLFLSTFLHACDA-RLLKLCHSSRLESCM-----ISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKD

Query:  IDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
         +K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  IDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

A0A6J1KZM9 uncharacterized protein LOC1114985213.8e-64100Show/hide
Query:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
        MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV
Subjt:  MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

U5GMJ2 Uncharacterized protein8.1e-0669.44Show/hide
Query:  DIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
        D ++ V SEEN++ ED+ VMDYAQPHRKPPIHN+KP
Subjt:  DIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 13.3e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNRK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNRK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).2.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNRK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGCCAACTTCTTTGTTTCTCGCTCTCCTATTCTTGTCAACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGGCTCGAATCGTG
TATGATCTCTCCAGGGTTTCGAATGGATCAACTCAAGAGAAGTTTGGATAAAAGCAAAAGTAACGAGGTTTCTTCCGTGGAGAATGTTGGGATTGAAATATTGAAGGGCA
TGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACAGAGACAGAGACAAAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAA
GACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCGAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
TATTTCTCTTTCCATTTCCATGCCCATGCCAACTTCTTTGTTTCTCGCTCTCCTATTCTTGTCAACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACA
GCTCGAGGCTCGAATCGTGTATGATCTCTCCAGGGTTTCGAATGGATCAACTCAAGAGAAGTTTGGATAAAAGCAAAAGTAACGAGGTTTCTTCCGTGGAGAATGTTGGG
ATTGAAATATTGAAGGGCATGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACAGAGACAGAGACAAAGACAAAGACATAGACAAAGTGGTGAACTCCGA
GGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCGAAAACCCTAGCTCACAACTTCATATCTCTTCGGAA
TTTCCTATGATCTTCAAAATATGTTCCAAAAATCAATGTATTGTATCTAAGGGTCTACTATATTCAAGATTTTTGTGTTAAATAAAAGCATGCA
Protein sequenceShow/hide protein sequence
MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGE
DMVVMDYAQPHRKPPIHNRKP