CuGenDBv2

Gene ID	CmaCh06G008430
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Phenylalanine--tRNA ligase
Genome location	Cma_Chr06:4659535..4661491
RNA-Seq Expression	CmaCh06G008430
Synteny	CmaCh06G008430
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:1901564 - organonitrogen compound metabolic process (biological process) GO:0016874 - ligase activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	IPR040724 - PheRS, DNA binding domain 1 IPR040725 - PheRS, DNA binding domain 3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596916.1 Phenylalanine--tRNA ligase alpha subunit, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-27

60.8

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE NVEISDSGLFA EF LDHNE+VNIIKSLNG+RYVDAE                                         KKLG SVFKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

KAG7030192.1 Phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-28

61.6

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAILRYLE NVEISDSGLFA EF LDHNE+VNIIKSLNG+RYVDAE                                         KKLG SVFKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

XP_022948806.1 phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like [Cucurbita moschata]

4.8e-29

62.4

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAILRYLE NVEISDSGLFAHEF LDHNE+VNIIKSLNG+RYVDAE                                         KKLG SVFKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

XP_023521081.1 phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like [Cucurbita pepo subsp. pepo]

7.4e-30

63.2

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAILRYLE NVEISDSGLFAHEF LDHNE+VNIIKSLNG+RYVDAE                                         KKLGLSVFKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

XP_038905221.1 phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Benincasa hispida]

2.2e-26

58.4

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE NVEISDSG FA EF LDHNE+VN+IKSLNG+RYVDAE                                         KKLG S+FKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L425 Phenylalanine--tRNA ligase

4.5e-25

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE N EISDSG FA EF LDHNE+VN+IKSLNG+RYVDAE                                         KKLG S+FKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKV HV+D
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

A0A6J1DPI5 Phenylalanine--tRNA ligase

4.5e-25

55.2

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE N+EISDSG FA EF LDH+++VN+IKSLNG+RYV+AE                                         KKLG S+FKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

A0A6J1E9L5 Phenylalanine--tRNA ligase

9.1e-26

57.6

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE NVEISDSG FA EF LDHNE+VN+IKSLNG+RYVDAE                                         KKLG S+FKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ ISRKVQHV+D
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

A0A6J1GA81 Phenylalanine--tRNA ligase

2.3e-29

62.4

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAILRYLE NVEISDSGLFAHEF LDHNE+VNIIKSLNG+RYVDAE                                         KKLG SVFKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ+ISRKVQHVDD
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

A0A6J1L3Z0 Phenylalanine--tRNA ligase

1.4e-26

58.4

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC
        EEAIL YLE NVEISDSG FA EFRLDHNE+VN+IKSLNG+RYVDAE                                         KKLG S+FKIGC
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAE-----------------------------------------KKLGLSVFKIGC

Query:  AQAAKNKWVEMGKQVISRKVQHVDD
        AQAAKNKWVEMGKQ ISRKVQHV+D
Subjt:  AQAAKNKWVEMGKQVISRKVQHVDD

SwissProt top hits

e value

%identity

Alignment

Q9T034 Phenylalanine--tRNA ligase alpha subunit, cytoplasmic

1.1e-20

46.03

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG
        EEAIL +L+NN +I+DSG F+ EF +DHNELVN+IKSL+G+RY+D                                           +KKL  +VFKIG
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG

Query:  CAQAAKNKWVEMGKQVISRKVQHVDD
        C+QA KNKWVEMGKQV SRKV+ V+D
Subjt:  CAQAAKNKWVEMGKQVISRKVQHVDD

Arabidopsis top hits

e value

%identity

Alignment

AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

7.9e-22

46.03

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG
        EEAIL +L+NN +I+DSG F+ EF +DHNELVN+IKSL+G+RY+D                                           +KKL  +VFKIG
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG

Query:  CAQAAKNKWVEMGKQVISRKVQHVDD
        C+QA KNKWVEMGKQV SRKV+ V+D
Subjt:  CAQAAKNKWVEMGKQVISRKVQHVDD

AT4G39280.2 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

7.9e-22

46.03

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Query:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG
        EEAIL +L+NN +I+DSG F+ EF +DHNELVN+IKSL+G+RY+D                                           +KKL  +VFKIG
Subjt:  EEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDA------------------------------------------EKKLGLSVFKIG

Query:  CAQAAKNKWVEMGKQVISRKVQHVDD
        C+QA KNKWVEMGKQV SRKV+ V+D
Subjt:  CAQAAKNKWVEMGKQVISRKVQHVDD

Sequences

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CDS sequence

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ATGCATTGCTGGAGGCCTCCTCTCTTAGTATTTCGCCTAAAAATCAGTCACTTGAATTCATATTTTCCATCCCTTAAACACATGCCCCGTTATCGGTTCAGTATC
AGGAATAAGATGAGCCAAACAACAACAACGGTAGAGGAAGCAATTCTCCGTTACCTTGAGAACAACGTCGAAATCTCCGATTCTGGACTGTTCGCCCACGAATTT
CGACTCGATCACAATGAGCTCGTCAACATCATCAAGAGTCTCAACGGCTACAGATACGTCGATGCTGAAAAAAAGTTGGGTCTATCTGTTTTCAAGATTGGATGT
GCTCAGGCAGCAAAGAACAAATGGGTTGAAATGGGGAAGCAAGTAATATCCAGAAAGGTTCAACATGTTGATGATTAG

mRNA sequence

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Protein sequence

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MHCWRPPLLVFRLKISHLNSYFPSLKHMPRYRFSIRNKMSQTTTTVEEAILRYLENNVEISDSGLFAHEFRLDHNELVNIIKSLNGYRYVDAEKKLGLSVFKIGC
AQAAKNKWVEMGKQVISRKVQHVDD

CmaCh06G008430 (gene) of Cucurbita maxima (Rimu) v1.1 genome