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CmaCh06G010330 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G010330
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionarabinogalactan peptide 20-like
Genome locationCma_Chr06:6947629..6948160
RNA-Seq ExpressionCmaCh06G010330
SyntenyCmaCh06G010330
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597108.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]8.1e-2193.75Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVL
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]1.3e-1580.95Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

XP_022934029.1 arabinogalactan peptide 20-like [Cucurbita moschata]1.7e-2396.88Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

XP_022974647.1 arabinogalactan peptide 16-like [Cucurbita maxima]4.1e-25100Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]2.1e-2498.46Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        MASSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like6.5e-1680.95Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

A0A6J1E8M6 arabinogalactan peptide 16-like2.7e-1476.92Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SS+ST  AFSG FT F LI FIL PLV AHSS  A APAPAPASDGTSIDQG+AYVLML+ALVL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVL

A0A6J1F1F2 arabinogalactan peptide 20-like8.4e-2496.88Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

A0A6J1IAU1 arabinogalactan peptide 16-like2.0e-25100Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

A0A6J1IQM6 arabinogalactan peptide 20-like1.8e-1373.85Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVL
        +SS+ST  AFSG FT F LI FIL PL+ AHSS  + APAPAPASDGTSIDQG+AYVLML+ALVL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.4e-0762Show/hide
Query:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVL
Subjt:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

Q8L9T8 Arabinogalactan protein 411.8e-1068.52Show/hide
Query:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVL
Subjt:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

Q9FK16 Arabinogalactan protein 227.4e-0968.09Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL L
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

Q9M373 Arabinogalactan protein 205.3e-0761.7Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVL
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 169.9e-0962Show/hide
Query:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVL
Subjt:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

AT3G61640.1 arabinogalactan protein 203.8e-0861.7Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVL
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

AT5G24105.1 arabinogalactan protein 411.2e-1168.52Show/hide
Query:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVL
Subjt:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL

AT5G53250.1 arabinogalactan protein 225.2e-1068.09Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL
        F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL L
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTC
TGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTTTGTGTAAAATCAGGGACCTCCATAGAC
CAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTA
GCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTC
TGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTTTGTGTAAAATCAGGGACCTCCATAGAC
CAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTA
GCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGA
Protein sequenceShow/hide protein sequence
MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLCKIRDLHRPGDCVRVDADGVGSHISHPSSRCIFLPIFSELSSRIV
AMLALFFGFLKMRLVDKS