; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh06G010560 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G010560
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptioncyclic nucleotide-gated ion channel 1-like
Genome locationCma_Chr06:7115695..7116252
RNA-Seq ExpressionCmaCh06G010560
SyntenyCmaCh06G010560
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005216 - ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022938347.1 cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucurbita moschata]1.5e-4582.76Show/hide
Query:  MQVTIFMGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV-----
        MQVTIFMGSQIPKTVRF QPTSDFHD+YGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDP+FFYV     
Subjt:  MQVTIFMGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV-----

Query:  ------MEQDICAVLC
              M+QD+  + C
Subjt:  ------MEQDICAVLC

XP_022974666.1 cyclic nucleotide-gated ion channel 1-like [Cucurbita maxima]1.6e-4785.22Show/hide
Query:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------
        MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV      
Subjt:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------

Query:  -----MEQDICAVLC
             M+QD+  + C
Subjt:  -----MEQDICAVLC

XP_022974943.1 cyclic nucleotide-gated ion channel 1-like [Cucurbita maxima]1.6e-4785.22Show/hide
Query:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------
        MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV      
Subjt:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------

Query:  -----MEQDICAVLC
             M+QD+  + C
Subjt:  -----MEQDICAVLC

XP_022980030.1 cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucurbita maxima]4.1e-2763.3Show/hide
Query:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV
        MGSQIPK+ RF  PTSDFHDKYG +QNRSRLSP S+LE + R            +T + F         KP+FWKKILDPQK FLQQWNKIFVLSSVIAV
Subjt:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV

Query:  AVDPIFFYV
        AVDP+FFY+
Subjt:  AVDPIFFYV

XP_022980035.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucurbita maxima]4.1e-2763.3Show/hide
Query:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV
        MGSQIPK+ RF  PTSDFHDKYG +QNRSRLSP S+LE + R            +T + F         KP+FWKKILDPQK FLQQWNKIFVLSSVIAV
Subjt:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV

Query:  AVDPIFFYV
        AVDP+FFY+
Subjt:  AVDPIFFYV

TrEMBL top hitse value%identityAlignment
A0A6J1FDS7 cyclic nucleotide-gated ion channel 1-like isoform X17.3e-4682.76Show/hide
Query:  MQVTIFMGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV-----
        MQVTIFMGSQIPKTVRF QPTSDFHD+YGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDP+FFYV     
Subjt:  MQVTIFMGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV-----

Query:  ------MEQDICAVLC
              M+QD+  + C
Subjt:  ------MEQDICAVLC

A0A6J1IBZ6 cyclic nucleotide-gated ion channel 1-like7.8e-4885.22Show/hide
Query:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------
        MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV      
Subjt:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------

Query:  -----MEQDICAVLC
             M+QD+  + C
Subjt:  -----MEQDICAVLC

A0A6J1IHT6 cyclic nucleotide-gated ion channel 1-like7.8e-4885.22Show/hide
Query:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------
        MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV      
Subjt:  MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV------

Query:  -----MEQDICAVLC
             M+QD+  + C
Subjt:  -----MEQDICAVLC

A0A6J1IV06 cyclic nucleotide-gated ion channel 1-like isoform X12.0e-2763.3Show/hide
Query:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV
        MGSQIPK+ RF  PTSDFHDKYG +QNRSRLSP S+LE + R            +T + F         KP+FWKKILDPQK FLQQWNKIFVLSSVIAV
Subjt:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV

Query:  AVDPIFFYV
        AVDP+FFY+
Subjt:  AVDPIFFYV

A0A6J1IV11 cyclic nucleotide-gated ion channel 1-like isoform X22.0e-2763.3Show/hide
Query:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV
        MGSQIPK+ RF  PTSDFHDKYG +QNRSRLSP S+LE + R            +T + F         KP+FWKKILDPQK FLQQWNKIFVLSSVIAV
Subjt:  MGSQIPKTVRF-QPTSDFHDKYGGYQNRSRLSPSSMLECLHRG-----------LTQIGF---------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAV

Query:  AVDPIFFYV
        AVDP+FFY+
Subjt:  AVDPIFFYV

SwissProt top hitse value%identityAlignment
O65717 Cyclic nucleotide-gated ion channel 13.1e-0942.71Show/hide
Query:  FMGSQIPKTVRFQPT-SDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWK------KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        + G    +T  FQ T S   DK+     RS  S S+ ++   R      FK    K      KILDPQ  FLQ+WNKIFVL+ +IAV++DP+FFYV
Subjt:  FMGSQIPKTVRFQPT-SDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWK------KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

Q9LD40 Putative cyclic nucleotide-gated ion channel 133.1e-0939.13Show/hide
Query:  VRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQ-IGF-----------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        VRF+       +YG  +N++R S +++L+ + RGL + + F                K I++PQ SFLQ WNKIF+ +SVIA+A+DP+FFY+
Subjt:  VRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQ-IGF-----------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

Q9LNJ0 Probable cyclic nucleotide-gated ion channel 101.1e-0660Show/hide
Query:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        K I++PQ SFLQ WNKIF+ + V+A+A+DP+FFY+
Subjt:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

Q9S9N5 Putative cyclic nucleotide-gated ion channel 73.5e-0557.14Show/hide
Query:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        KKI DPQ   L  WN++FV+S ++AV+VDP+FFY+
Subjt:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

Q9SKD7 Probable cyclic nucleotide-gated ion channel 31.6e-0555.88Show/hide
Query:  KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        ++++P  S+LQ WNKIF+L SV+A+A DP+FFY+
Subjt:  KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

Arabidopsis top hitse value%identityAlignment
AT1G01340.1 cyclic nucleotide gated channel 107.8e-0860Show/hide
Query:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        K I++PQ SFLQ WNKIF+ + V+A+A+DP+FFY+
Subjt:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

AT1G01340.2 cyclic nucleotide gated channel 107.8e-0860Show/hide
Query:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        K I++PQ SFLQ WNKIF+ + V+A+A+DP+FFY+
Subjt:  KKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

AT2G46430.1 cyclic nucleotide gated channel 31.1e-0655.88Show/hide
Query:  KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        ++++P  S+LQ WNKIF+L SV+A+A DP+FFY+
Subjt:  KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

AT4G01010.1 cyclic nucleotide-gated channel 132.2e-1039.13Show/hide
Query:  VRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQ-IGF-----------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        VRF+       +YG  +N++R S +++L+ + RGL + + F                K I++PQ SFLQ WNKIF+ +SVIA+A+DP+FFY+
Subjt:  VRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQ-IGF-----------KPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV

AT5G53130.1 cyclic nucleotide gated channel 12.2e-1042.71Show/hide
Query:  FMGSQIPKTVRFQPT-SDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWK------KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV
        + G    +T  FQ T S   DK+     RS  S S+ ++   R      FK    K      KILDPQ  FLQ+WNKIFVL+ +IAV++DP+FFYV
Subjt:  FMGSQIPKTVRFQPT-SDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWK------KILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTGACCATATTTATGGGTTCCCAGATACCAAAAACTGTAAGGTTTCAACCAACTTCTGACTTCCATGACAAATATGGAGGCTACCAAAACAGAAGCAGA
CTGTCTCCAAGCTCAATGTTGGAATGTTTACACAGAGGATTAACACAAATAGGCTTCAAACCAGAATTTTGGAAGAAAATTCTTGATCCACAGAAGTCATTTCTT
CAGCAATGGAACAAGATATTTGTGCTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTATCTTCTTTTACGTAATGGAACAAGATATTTGTGCTGTCCTCTGTCAT
AGCAGTAGCTGTGGACCCTATCTTCTTTTACGTTCCAGTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTGACCATATTTATGGGTTCCCAGATACCAAAAACTGTAAGGTTTCAACCAACTTCTGACTTCCATGACAAATATGGAGGCTACCAAAACAGAAGCAGA
CTGTCTCCAAGCTCAATGTTGGAATGTTTACACAGAGGATTAACACAAATAGGCTTCAAACCAGAATTTTGGAAGAAAATTCTTGATCCACAGAAGTCATTTCTT
CAGCAATGGAACAAGATATTTGTGCTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTATCTTCTTTTACGTAATGGAACAAGATATTTGTGCTGTCCTCTGTCAT
AGCAGTAGCTGTGGACCCTATCTTCTTTTACGTTCCAGTATTTGA
Protein sequenceShow/hide protein sequence
MQVTIFMGSQIPKTVRFQPTSDFHDKYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPIFFYVMEQDICAVLCH
SSSCGPYLLLRSSI