; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh06G014090 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G014090
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCma_Chr06:9081319..9082878
RNA-Seq ExpressionCmaCh06G014090
SyntenyCmaCh06G014090
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650358.1 hypothetical protein Csa_010013 [Cucumis sativus]4.7e-4086.6Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+S+LQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]2.7e-4087.63Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+SSLQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]2.7e-4087.63Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+SSLQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]4.7e-4086.6Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+S+LQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

XP_022973690.1 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 [Cucurbita maxima]1.7e-4597.96Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK-PPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK  PLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK-PPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein2.3e-4086.6Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+S+LQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X21.3e-4087.63Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+SSLQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X11.3e-4087.63Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+SSLQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X21.3e-4087.63Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEP +GLTSTN+KAGS+SSLQMAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVF+WFS SKPPLYV+DLENLLHE LLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

A0A6J1IC01 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR28.0e-4697.96Show/hide
Query:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK-PPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK  PLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
Subjt:  MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSK-PPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

SwissProt top hitse value%identityAlignment
Q3KRG3 Pre-rRNA-processing protein TSR2 homolog4.3e-0432Show/hide
Query:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        A+ +V   W  LQ+A+DN +GG  S QK+  +   +  +F+ +   L  D++E+ + E +   F+T ++DGS+ Q
Subjt:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ

Q3T090 Pre-rRNA-processing protein TSR2 homolog8.6e-0533.33Show/hide
Query:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F ++   L +D++E+ L E ++  F+T +EDGS+ Q S+
Subjt:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog1.9e-0432.05Show/hide
Query:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F  +   L ++++E+ L E +   F+T +EDGS+ Q S+
Subjt:  AISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR

Q969E8 Pre-rRNA-processing protein TSR2 homolog1.1e-0433.77Show/hide
Query:  ISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR
        + +    W  LQ+A++N +GG  S +K+  L   V  +F ++   L +D++E+ L E L   F+T +EDGS+ Q S+
Subjt:  ISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region3.7e-1960Show/hide
Query:  SSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ
        S LQ  I  + SRW GLQMA+ N+WGG DS +KS  LA ++F   SQS   + V+++ENLLHE LLLSFNTEIEDGSIE+
Subjt:  SSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAAATAATGGATTAACCTCAACCAATCACAAGGCAGGATCTATCTCCAGTCTCCAAATGGCTATATCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCAGATGTTTTCACTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGACGATC
TGGAAAATTTGCTCCATGAACACCTGCTTCTCTCCTTCAACACCGAGATCGAAGATGGTAGCATCGAACAGGGAAGTCGCTAG
mRNA sequenceShow/hide mRNA sequence
CTCTACTGCAAGCTGATAATGCGCAAACCAAGCTTACATAGCTCGGCGCCATGCCCACCATCGATGCCATCTCCTCGAGCAATGCCACAGCCTTGTCTGCGTATCCGCCC
AACAACGTATTCCTGTCAAAAACCATCTCAGAGCATTCAACCTCCCCACATTTCCCATAAAAAGCAATCAACCCATTTGAAACAGAGACATTCTGCGCACACCCACTTCG
AATAATGAACCCATGTAGCTGACACCAATGCACCCAGCCTAGTTTCTCTGAACACGCATTGAGAAAAGCACAGACATTATTGAATCTGCCTTCCCACCAACTCGAAGTAG
CTCAATAAATGCAATGGTAGAGACCTCAGCCCGCCCATGGAGCACAGAATTGGATATATACGCATTCCACGTCTCGAGGTTTCGGTGAGGCATTTCAACGAACAACTTGC
ACGCATCCTCACTAACACCCAATTTCGCGAACATGTCGACGGCACTGCACCCGACTAAGACATCGTTTATTGATCCCTCCTTAATCGTGTAGCTGTTTGCATGTCATGGC
CATGCGAAGGTCAGTGGAGGTGAAGTCATTGGGTCGAACAGAGCAGAATTAAAACGATTGTTTTGGACAGAGCCGGCGACGAGGACGGTTCAAATGACGACGGAGTGGCA
AAAAAAGTCCCAAATGTTTCTCTCTCTTTCCATCCAAACAGTTCTCCGCTTTTCTCTCCGCCCGATTCTGCCATTAATTTCTCAATTCAACCGCCCTCTCTCTCTCTCTC
TCTGATGATTCAGTTAGAAGAGGAGAAAGAAAAATAAGATTTCTAGGGTTTGGAGGAAGGAGAAGACGAAGACGAAGACGAAGCTCTGAGGTTTATCCATGGAGCCAAAT
AATGGATTAACCTCAACCAATCACAAGGCAGGATCTATCTCCAGTCTCCAAATGGCTATATCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAA
ATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCAGATGTTTTCACTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGACGATCTGGAAAATTTGC
TCCATGAACACCTGCTTCTCTCCTTCAACACCGAGATCGAAGATGGTAGCATCGAACAGGGAAGTCGCTAGAAGAATGTAGGATCTACGTTCATCAGAGAAATTAAACAA
TCTGCCATTGGACCCAAGCGAAATCTTCCGAGAATTATTGTCATCAATGTTCAAAATTGGAACTTCGTAAATGGATGATGATCCCTTCATCTCCCTGTTTCGTAAATAGT
TCGATGCTCTTAATTTGATTTCTCG
Protein sequenceShow/hide protein sequence
MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQGSR