; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh06G014100 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G014100
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCma_Chr06:9081631..9084807
RNA-Seq ExpressionCmaCh06G014100
SyntenyCmaCh06G014100
Gene Ontology termsGO:0009240 - isopentenyl diphosphate biosynthetic process (biological process)
GO:0009451 - RNA modification (biological process)
GO:0044281 - small molecule metabolic process (biological process)
GO:1901135 - carbohydrate derivative metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582300.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

KAG7018711.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

XP_022956070.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita moschata]5.4e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

XP_022979420.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima]5.4e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

XP_023526347.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita pepo subsp. pepo]5.4e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

TrEMBL top hitse value%identityAlignment
A0A0A0L4T8 Uncharacterized protein1.1e-2473.17Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCS  DM++KLG   DA K+F EMPHRNLETWNAYISNSVLHGR E S IAFIELLRVGGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

A0A5A7U206 Pentatricopeptide repeat-containing protein7.8e-2370.73Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCS  DM++KLG   DA KLF EMP RNLETWNAYI+NSVLHGR E S IAFIELLRVG K DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

A0A6J1C7M0 pentatricopeptide repeat-containing protein At4g148502.4e-2470.73Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCS  DM++KLG+ EDA K+FVEMPHRNLETWNAYISNSV HGR E S IAF+ELLR GG  DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

A0A6J1GWT9 pentatricopeptide repeat-containing protein At4g148502.6e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

A0A6J1IQR6 pentatricopeptide repeat-containing protein At4g148502.6e-2675.61Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +KEG INDV VGCSA DM++KLG+ +DA KLFVEMPHRNLETWNAYISNSVLHGR E S IAFIELLR GGK DSI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

SwissProt top hitse value%identityAlignment
O49619 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic5.2e-0839.02Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        IK G ++DV V  S + ++ KLG + DA K+F EMP R++ +WN+ IS  +  G    S + F E+L+ G K D    M +L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

Q0WSH6 Pentatricopeptide repeat-containing protein At4g148502.3e-1653.66Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +K G I DV VGCSA DM+ K  + +DA KLF E+P RNLETWNA+ISNSV  GR   +  AFIE  R+ G  +SI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic3.4e-0735Show/hide
Query:  EGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +G  N   +  S +DM+AK G  E A ++F  + H++L +WNA I    +HGRA+ S   F  + ++G + D I ++G L
Subjt:  EGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

Q9LVF9 Pentatricopeptide repeat-containing protein At3g214705.2e-0838.14Show/hide
Query:  TIKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRA--------EVS----TIAFIELLRVGGKADSIIYMGSLFE
        +IK G  +DV+VG S + M+ K G    A K+F EMP RN+ TWNA I   + +G A        E+S    T+ +IE+++  GK   I     LFE
Subjt:  TIKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRA--------EVS----TIAFIELLRVGGKADSIIYMGSLFE

Q9S7F4 Putative pentatricopeptide repeat-containing protein At2g015101.6e-0926.92Show/hide
Query:  LKERSRCSWSKFSRSSTYRGAATEGSIAELDPWKKIEKLRKNQVKTSEARFSD-----------------FCYTIKEGSINDVLVGCSAVDMFAKLGVSE
        L +R+  SW+        +G    G        K   K+R + ++  ++ F+                    + I+ G++ +V  G   VDM+AK G  +
Subjt:  LKERSRCSWSKFSRSSTYRGAATEGSIAELDPWKKIEKLRKNQVKTSEARFSD-----------------FCYTIKEGSINDVLVGCSAVDMFAKLGVSE

Query:  DACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        DA ++F EMP RN  +WNA IS    +G  E +  AF +++  G + DS+  +G L
Subjt:  DACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-0835Show/hide
Query:  EGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +G  N   +  S +DM+AK G  E A ++F  + H++L +WNA I    +HGRA+ S   F  + ++G + D I ++G L
Subjt:  EGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

AT3G02010.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-1026.92Show/hide
Query:  LKERSRCSWSKFSRSSTYRGAATEGSIAELDPWKKIEKLRKNQVKTSEARFSD-----------------FCYTIKEGSINDVLVGCSAVDMFAKLGVSE
        L +R+  SW+        +G    G        K   K+R + ++  ++ F+                    + I+ G++ +V  G   VDM+AK G  +
Subjt:  LKERSRCSWSKFSRSSTYRGAATEGSIAELDPWKKIEKLRKNQVKTSEARFSD-----------------FCYTIKEGSINDVLVGCSAVDMFAKLGVSE

Query:  DACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        DA ++F EMP RN  +WNA IS    +G  E +  AF +++  G + DS+  +G L
Subjt:  DACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

AT3G21470.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.7e-0938.14Show/hide
Query:  TIKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRA--------EVS----TIAFIELLRVGGKADSIIYMGSLFE
        +IK G  +DV+VG S + M+ K G    A K+F EMP RN+ TWNA I   + +G A        E+S    T+ +IE+++  GK   I     LFE
Subjt:  TIKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRA--------EVS----TIAFIELLRVGGKADSIIYMGSLFE

AT4G14850.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-1753.66Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        +K G I DV VGCSA DM+ K  + +DA KLF E+P RNLETWNA+ISNSV  GR   +  AFIE  R+ G  +SI +   L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL

AT4G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.7e-0939.02Show/hide
Query:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL
        IK G ++DV V  S + ++ KLG + DA K+F EMP R++ +WN+ IS  +  G    S + F E+L+ G K D    M +L
Subjt:  IKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNAYISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCATCTTCGATCTCGGTGTTGAAGGAGAGAAGCAGGTGTTCATGGAGCAAATTTTCCAGATCGTCCACGTACAGGGGAGCTGCAACGGAAGGAAGCATAGCGGA
ATTAGATCCATGGAAGAAGATCGAGAAACTCCGGAAGAACCAAGTGAAAACATCTGAGGCGAGATTCAGCGATTTCTGCTACACGATTAAGGAGGGATCAATAAACGATG
TCTTAGTCGGGTGCAGTGCCGTCGACATGTTCGCGAAATTGGGTGTTAGTGAGGATGCGTGCAAGTTGTTCGTTGAAATGCCTCACCGAAACCTCGAGACGTGGAATGCG
TATATATCCAATTCTGTGCTCCATGGGCGGGCTGAGGTCTCTACCATTGCATTTATTGAGCTACTTCGAGTTGGTGGGAAGGCAGATTCAATAATCTACATGGGTTCATT
ATTCGAAGAATACGTTGTTGGGCGGATACGCAGACAAGGCTGTGGCATTGCTCGAGGAGATGGCATCGATGGTGGGCATGGCGCCGAGCTATTCCATGAAAGCAAGGTTT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCTACCATCTTCGATCTCGGTGTTGAAGGAGAGAAGCAGGTGTTCATGGAGCAAATTTTCCAGATCGTCCACGTACAGGGGAGCTGCAACGGAAGGAAGCATAGCGGA
ATTAGATCCATGGAAGAAGATCGAGAAACTCCGGAAGAACCAAGTGAAAACATCTGAGGCGAGATTCAGCGATTTCTGCTACACGATTAAGGAGGGATCAATAAACGATG
TCTTAGTCGGGTGCAGTGCCGTCGACATGTTCGCGAAATTGGGTGTTAGTGAGGATGCGTGCAAGTTGTTCGTTGAAATGCCTCACCGAAACCTCGAGACGTGGAATGCG
TATATATCCAATTCTGTGCTCCATGGGCGGGCTGAGGTCTCTACCATTGCATTTATTGAGCTACTTCGAGTTGGTGGGAAGGCAGATTCAATAATCTACATGGGTTCATT
ATTCGAAGAATACGTTGTTGGGCGGATACGCAGACAAGGCTGTGGCATTGCTCGAGGAGATGGCATCGATGGTGGGCATGGCGCCGAGCTATTCCATGAAAGCAAGGTTT
AGTACGTACCCAAGGCCCGGCATTAAGCTTACTCGGTAGTTCTTGGTGTTGGTTTGGGCTGTTATAAATGGTATCAAAGTCATGTAAGCGTTGGTGAGTCAATGAAGACG
CTGGCCCTATGAGTTGTATTGTTAGGTCCCAAATCAGTTGGAGAAAGAAAGAAATGTTCCTTATTCTTGAAACTTATGTCTAGTAAAGACGTTTTAAATCATGAGGCTGA
CAGCGATATGGAACGGACTAAAATGAATAATATCTGCTAGTGGAGAGTTTAGACTGTTACAAATGGCAGAGTCATTCGAGCGGCGGGTCAACGAGAATGCTAGCTTCTAA
AGGGTGGACTGTTAGGTGTCACATCGGTCTAAGGGTGGATTGTTAGGTGTCACATGTACGTAACCACGTGTGGTTGGGTTATAATTTCTCAAGTTTTCCCCCATTCACCA
TCTGTACATAACATCATCAAATTGCCATCCTTCCCTCTGCATTCAACACTTGTCCCAACAAAGCCAACCCACCGCAACTGCTTCCCCACATCAATCCCTTCAAACAGCGC
ACAACAAAATCCAGCTGCCACTGCAGAAAGAAACCTCCCATACTTATTTTTATTTTATGTTGATAACATGAGTTGGGAACAGCCACGTAGGGGTGAAGAACAGCGGCAGC
CTCGCCGGAACGACGTCGACGAGGGGGAGGAAACCATCAAATACGGCGACGTTTTCAACGTCTCCGGCGACCTGGCTGCAAACCCCATCGCACCACAGGATGCTCGCATG
ATGGGCAGTGCCGAAACCAGGGTATTGGGGCAAGTGCCGCCGGCTGGTCCGGCCGATATCATGCGAGCCGCCGCTGCTTATAATGTCCGGGTCGGTCTTCTTGGTGACCG
TGATGTTAGCTATGCTGCTAAAAACGAAGGCATCAACATTAGCGAGACCGATATTCCCGGAGCCCGTGTCGTAACCGAACGCGTCGCCGGACAGGTCGTCGGCCAGTATT
TGGACACCACGACGGCGATTGAGACAGAGACGACAGAGCAGAATGTAATAACGATCGGAGAAGCACTAGAAGCGGCGGGTCAAACTGCCGGAAACAAACCGGTGGAACAG
AGTGACGCTGCAGCAATTCAAGCCGCAGAGGGCAGAGCAACCGGTAGCAATGCCATATCTCCCGGTGGGCTCACAGCCACAGCTCAATCGGCGGCGAGTTTCAACGCCGG
GATGATTCGAGACGAGGACAAGATCAAGCTCAACTATGTCCTAATGGGTGCAAAAGGAAAACTGGCGACGGACAAGCCAGTGAGCCGGAAGGATGCGGATGGGGTGGTGA
GCGCGGAGCTGAGTAACAATCCAAACTTGATCACTCACCCAGGTGGGGTGGCGGCCACCATCACCGCCGCCGCGAGGCTGAATGAGGACGGCGGCGCAGATATATGAAAA
TAGTGACTTTTTAAATTCTTGTTCTTCTTTTTTGGTTGCTGTATTTGAAGTTCAAAAAAAAATAAACAATCAGCTGTTTTGCTGACTGTTAGTCAGGATTTCTTTCCTTT
TTTTTTTCTTTTTTTTTTTGGTTGAGAAAATTAAGGACGGTTCATGGGTTTGGTCTTTTATATTATATAAATAATTTTTGTTCAATTGAA
Protein sequenceShow/hide protein sequence
MLPSSISVLKERSRCSWSKFSRSSTYRGAATEGSIAELDPWKKIEKLRKNQVKTSEARFSDFCYTIKEGSINDVLVGCSAVDMFAKLGVSEDACKLFVEMPHRNLETWNA
YISNSVLHGRAEVSTIAFIELLRVGGKADSIIYMGSLFEEYVVGRIRRQGCGIARGDGIDGGHGAELFHESKV