CuGenDBv2

Gene ID	CmaCh06G014980
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S21
Genome location	Cma_Chr06:9517841..9520484
RNA-Seq Expression	CmaCh06G014980
Synteny	CmaCh06G014980
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

1.4e-37

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]

3.0e-37

95.12

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+D+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

1.9e-39

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]

6.5e-40

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

XP_023538827.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo]

5.5e-39

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKK EVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7W3 40S ribosomal protein S21

6.6e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

A0A1S4DSM1 40S ribosomal protein S21

6.6e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

A0A5D3CXC9 40S ribosomal protein S21

6.6e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

A0A6J1GFE6 40S ribosomal protein S21

9.2e-40

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

A0A6J1IJN4 40S ribosomal protein S21

3.1e-40

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

7.2e-34

78.05

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+D+NG+Y G+F+TFAL GFIRAQGDADSALDRLW K+K EV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

Q3E902 40S ribosomal protein S21-2

1.6e-36

85.19

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLW KKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ

Q41852 40S ribosomal protein S21

4.7e-33

77.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLW KKK E+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ

Q9M337 40S ribosomal protein S21-1

1.7e-35

80.49

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

Q9SMI2 40S ribosomal protein S21

2.8e-25

69.44

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDN-GIYTGQFSTFALCGFIRAQGDADSALDRL
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDN-GIYTGQFSTFALCGFIRAQGDADSALDRL

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

1.2e-36

80.49

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e

1.2e-36

80.49

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

AT5G27700.1 Ribosomal protein S21e

1.1e-37

85.19

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLW KKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGG
GCATTTGGATGACAATGGCATCTACACCGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGAGATGCTGACAGCGCCCTGGATCGGCTCTGGCACA
AGAAGAAAGTCGAAGTTCATCAACAATAG

mRNA sequence

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Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

CmaCh06G014980 (gene) of Cucurbita maxima (Rimu) v1.1 genome