; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh06G016560 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh06G016560
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionEukaryotic translation initiation factor 4C
Genome locationCma_Chr06:10253566..10254492
RNA-Seq ExpressionCmaCh06G016560
SyntenyCmaCh06G016560
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR001253 - Translation initiation factor 1A (eIF-1A)
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2961420.1 eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea]1.2e-21100Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

KAF9688255.1 hypothetical protein SADUNF_Sadunf02G0178300 [Salix dunnii]7.3e-2293.22Show/hide
Query:  KTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        +TE MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  KTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

KAG5400061.1 hypothetical protein IGI04_014668 [Brassica rapa subsp. trilocularis]2.5e-2291.8Show/hide
Query:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        D  TE MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

KHG13840.1 Eukaryotic translation initiation factor 1A [Gossypium arboreum]3.3e-2291.94Show/hide
Query:  LDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        L E+ E MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  LDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

TXG55454.1 hypothetical protein EZV62_020710 [Acer yangbiense]4.3e-2290.16Show/hide
Query:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        ++++E MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQV+RMLGNGRCEATCIDGT
Subjt:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

TrEMBL top hitse value%identityAlignment
A0A0B0NM01 Eukaryotic translation initiation factor 4C1.6e-2291.94Show/hide
Query:  LDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        L E+ E MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  LDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

A0A5B7ART2 Eukaryotic translation initiation factor 4C6.0e-22100Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

A0A5C7HEM7 Eukaryotic translation initiation factor 4C2.1e-2290.16Show/hide
Query:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        ++++E MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQV+RMLGNGRCEATCIDGT
Subjt:  DEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

A0A6N2N0V8 Eukaryotic translation initiation factor 4C3.5e-2293.22Show/hide
Query:  KTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        +TE MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  KTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

A0A7N0T267 Eukaryotic translation initiation factor 4C6.0e-22100Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

SwissProt top hitse value%identityAlignment
P47813 Eukaryotic translation initiation factor 1A, X-chromosomal7.9e-1983.33Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG

P47815 Eukaryotic translation initiation factor 1A9.0e-2392.73Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA C+DGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

P56331 Eukaryotic translation initiation factor 1A1.8e-2396.36Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

Q5RA42 Eukaryotic translation initiation factor 1A, X-chromosomal7.9e-1983.33Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal7.9e-1983.33Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG

Arabidopsis top hitse value%identityAlignment
AT2G04520.1 Nucleic acid-binding, OB-fold-like protein7.5e-2596.36Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGT
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein1.9e-2392.59Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein1.9e-2392.59Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein1.9e-2392.59Show/hide
Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCATCTTGGGGTTTGTAATCTTGATGAAAAAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGA
GAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAACGTGAGCT
CATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCATCTTGGGGTTTGTAATCTTGATGAAAAAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGA
GAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAACGTGAGCT
CATGTTAG
Protein sequenceShow/hide protein sequence
MIHLGVCNLDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTNVSSC