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CmaCh07G003260 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh07G003260
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionTransporter associated with antigen processing protein 1
Genome locationCma_Chr07:1422504..1423640
RNA-Seq ExpressionCmaCh07G003260
SyntenyCmaCh07G003260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER29204.1 transporter associated with antigen processing protein 1, partial [Striga asiatica]5.5e-0733.33Show/hide
Query:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRHRGNCEVGFRVEGEGS
        V++  PA+ Q++L  ET   + N+K   NPI  +L I +   S  PPI+T +  A+  H   R+  L +IRAA         L      E G  VE E  
Subjt:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRHRGNCEVGFRVEGEGS

Query:  GGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG
         G ++  V AGPHV V + ++ + +AY  +   +G   E++L    A+++V VV AA AV+   G
Subjt:  GGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG

KAG7026644.1 hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-6892.86Show/hide
Query:  MQVTGALAFSFFNNKIAAATPSAPAADTALTVPAITRRNQSLHDMIWDTFTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPI
        + VTGALAFSFFNNKIAAATPSAPAADTALT PAITRRNQSL+DMIWDTFTVSSDILVITNAQE KRLNVKSTGPAALQNILATETRSS+NNIKINSNPI
Subjt:  MQVTGALAFSFFNNKIAAATPSAPAADTALTVPAITRRNQSLHDMIWDTFTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPI

Query:  FSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH
        FSHLIISLIHSSNAPPIHTRV SAVLEHQLQRIHGLGMIRAAGTS QR  TL H
Subjt:  FSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH

PON52123.1 hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii]1.1e-2036.65Show/hide
Query:  RNQSLHDMIWDT--FTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHG
        RN S   M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S+ N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+  
Subjt:  RNQSLHDMIWDT--FTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHG

Query:  LGMIRAAGTSLQRCRTLRH-------------------------------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVG
          +IR A ++     T+R                                                  RG  EVG  VE +GSGGA V  VLA PH  VG
Subjt:  LGMIRAAGTSLQRCRTLRH-------------------------------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVG

Query:  NEDIRIG-IAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV
         +++ IG +AYG NR  SG  SE+++    A+K+V+VV A AAVV AE VV
Subjt:  NEDIRIG-IAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV

PON91268.1 hypothetical protein TorRG33x02_128310, partial [Trema orientale]4.4e-2037.45Show/hide
Query:  VSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------
        +S  +   T AQE  R+N+K T PA+L +ILA +T  S+ N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A +S      
Subjt:  VSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------

Query:  ------------------LQRCRTLRH-------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIG-IAYGGNRE
                           +R  +LR                          RG  EV   VE + SGG +V  VLA PH  VG +++ IG +AYG NR 
Subjt:  ------------------LQRCRTLRH-------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIG-IAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV
         SG  S++E+    A K+V+VV AAAAVV AE VV
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV

RDX70635.1 hypothetical protein CR513_50104, partial [Mucuna pruriens]3.7e-1132.97Show/hide
Query:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH---------------
        +KST   + Q ILA +    + NIKINS+PIF  LII    S+N  PI+  + S +LEHQ QR+ G G++RAA T+ +R    R                
Subjt:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH---------------

Query:  ----------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVEL
                                    R   EVG  V+ EG   AK+ +VLA PH GV +  +RI +A   N       SE++L
Subjt:  ----------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVEL

TrEMBL top hitse value%identityAlignment
A0A2P5BTK1 Uncharacterized protein (Fragment)5.5e-2136.65Show/hide
Query:  RNQSLHDMIWDT--FTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHG
        RN S   M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S+ N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+  
Subjt:  RNQSLHDMIWDT--FTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHG

Query:  LGMIRAAGTSLQRCRTLRH-------------------------------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVG
          +IR A ++     T+R                                                  RG  EVG  VE +GSGGA V  VLA PH  VG
Subjt:  LGMIRAAGTSLQRCRTLRH-------------------------------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVG

Query:  NEDIRIG-IAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV
         +++ IG +AYG NR  SG  SE+++    A+K+V+VV A AAVV AE VV
Subjt:  NEDIRIG-IAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV

A0A2P5F0F7 Uncharacterized protein (Fragment)2.1e-2037.45Show/hide
Query:  VSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------
        +S  +   T AQE  R+N+K T PA+L +ILA +T  S+ N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A +S      
Subjt:  VSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------

Query:  ------------------LQRCRTLRH-------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIG-IAYGGNRE
                           +R  +LR                          RG  EV   VE + SGG +V  VLA PH  VG +++ IG +AYG NR 
Subjt:  ------------------LQRCRTLRH-------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIG-IAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV
         SG  S++E+    A K+V+VV AAAAVV AE VV
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVV

A0A371EX53 Uncharacterized protein (Fragment)1.8e-1132.97Show/hide
Query:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH---------------
        +KST   + Q ILA +    + NIKINS+PIF  LII    S+N  PI+  + S +LEHQ QR+ G G++RAA T+ +R    R                
Subjt:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRH---------------

Query:  ----------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVEL
                                    R   EVG  V+ EG   AK+ +VLA PH GV +  +RI +A   N       SE++L
Subjt:  ----------------------------RGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVEL

A0A5A7P9E7 Transporter associated with antigen processing protein 1 (Fragment)2.7e-0733.33Show/hide
Query:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRHRGNCEVGFRVEGEGS
        V++  PA+ Q++L  ET   + N+K   NPI  +L I +   S  PPI+T +  A+  H   R+  L +IRAA         L      E G  VE E  
Subjt:  VKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRHRGNCEVGFRVEGEGS

Query:  GGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG
         G ++  V AGPHV V + ++ + +AY  +   +G   E++L    A+++V VV AA AV+   G
Subjt:  GGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCGGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGTCCCTGCAATCACCCG
AAGAAATCAATCATTACATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATCACAAATGCACAAGAAACCAAGAGATTGAACGTCAAATCCACAG
GACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTAACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCAC
TCCTCCAATGCTCCTCCAATACACACTCGTGTAGGTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCCTCCA
GCGCTGTCGCACACTGCGGCACAGGGGAAACTGTGAGGTGGGTTTCCGGGTCGAGGGTGAAGGGTCGGGTGGGGCGAAAGTTTGGACCGTCTTGGCAGGTCCACATGTCG
GGGTTGGAAATGAGGATATAAGGATCGGAATAGCTTATGGCGGAAACAGGGAATGTTCCGGAGGGTGTTCGGAGGTGGAGTTGGTCGGAGGTTGTGCAGAAAAGAAGGTT
GCGGTAGTAGAGGCTGCCGCAGCCGTCGTCTATGCCGAAGGGGTAGTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCGGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGTCCCTGCAATCACCCG
AAGAAATCAATCATTACATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATCACAAATGCACAAGAAACCAAGAGATTGAACGTCAAATCCACAG
GACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTAACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCAC
TCCTCCAATGCTCCTCCAATACACACTCGTGTAGGTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCCTCCA
GCGCTGTCGCACACTGCGGCACAGGGGAAACTGTGAGGTGGGTTTCCGGGTCGAGGGTGAAGGGTCGGGTGGGGCGAAAGTTTGGACCGTCTTGGCAGGTCCACATGTCG
GGGTTGGAAATGAGGATATAAGGATCGGAATAGCTTATGGCGGAAACAGGGAATGTTCCGGAGGGTGTTCGGAGGTGGAGTTGGTCGGAGGTTGTGCAGAAAAGAAGGTT
GCGGTAGTAGAGGCTGCCGCAGCCGTCGTCTATGCCGAAGGGGTAGTGGATTGA
Protein sequenceShow/hide protein sequence
MQVTGALAFSFFNNKIAAATPSAPAADTALTVPAITRRNQSLHDMIWDTFTVSSDILVITNAQETKRLNVKSTGPAALQNILATETRSSNNNIKINSNPIFSHLIISLIH
SSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSLQRCRTLRHRGNCEVGFRVEGEGSGGAKVWTVLAGPHVGVGNEDIRIGIAYGGNRECSGGCSEVELVGGCAEKKV
AVVEAAAAVVYAEGVVD