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CmaCh07G004890 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh07G004890
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionAP complex subunit sigma
Genome locationCma_Chr07:2123394..2124048
RNA-Seq ExpressionCmaCh07G004890
SyntenyCmaCh07G004890
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]6.5e-1085.11Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
XP_011655957.1 AP-3 complex subunit sigma [Cucumis sativus]2.2e-1087.23Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MHTI DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
XP_022950395.1 AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata]1.9e-0982.98Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET S+EV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
XP_023543862.1 AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo]1.9e-0982.98Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET S+EV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
XP_038893159.1 AP-3 complex subunit sigma [Benincasa hispida]1.4e-0985.11Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MHTI DEIISG QVLET SS V+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
TrEMBL top hitse value%identityAlignment
A0A0A0KV87 Clat_adaptor_s domain-containing protein1.1e-1087.23Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MHTI DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
A0A1S3BT37 AP complex subunit sigma3.1e-1085.11Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
A0A6J1E2P6 AP complex subunit sigma1.2e-0982.98Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MHTI DEIISG QVLET SSEV+K VEEISKLE  SN+INFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
A0A6J1GFL2 AP complex subunit sigma9.1e-1082.98Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET S+EV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
A0A6J1IUE1 AP complex subunit sigma9.1e-1082.98Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH+I DEIISG QVLET S+EV+K VEEISKLE ASNSINFVSKTVS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
SwissProt top hitse value%identityAlignment
Q8VZ37 AP-3 complex subunit sigma1.5e-0970.21Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH + DEI+ G QVLET S+EV+K VEEISKLEAASNSI+ V K+VS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
Arabidopsis top hitse value%identityAlignment
AT3G50860.1 Clathrin adaptor complex small chain family protein1.1e-1070.21Show/hide
Query:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS
        MH + DEI+ G QVLET S+EV+K VEEISKLEAASNSI+ V K+VS
Subjt:  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACTATTTTTGATGAAATCATTTCCGGTAGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTGAAGACTGTCGAAGAAATATCCAAGTTAGAAGCAGCG
TCAAATTCCATCAACTTCGTATCCAAAACAGTTTCGGATTTTCTTCAATCACACGGCATATTGGTTTATGAGAAGTTAGTCAAAATCTCCGCAGAACTTTTTTAT
TGGTGTCCTGTGTTTTTGACCTGCAGTACATGGAAATGGATATTTGCTTCAATGCCAGATTTAAAAGGGTGTAGTAAACCTTATTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATACTATTTTTGATGAAATCATTTCCGGTAGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTGAAGACTGTCGAAGAAATATCCAAGTTAGAAGCAGCG
TCAAATTCCATCAACTTCGTATCCAAAACAGTTTCGGATTTTCTTCAATCACACGGCATATTGGTTTATGAGAAGTTAGTCAAAATCTCCGCAGAACTTTTTTAT
TGGTGTCCTGTGTTTTTGACCTGCAGTACATGGAAATGGATATTTGCTTCAATGCCAGATTTAAAAGGGTGTAGTAAACCTTATTTATAAGAGTGTGGAAACATC
TCAATAATTCTTGTTCCTGTCGATCACCGCTCCTCAATCTCAAAGTTCCTCCCTATCAGGGTCACTTACGATTTTGTTCAGATGTTATCAATGAGGA
Protein sequenceShow/hide protein sequence
MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDFLQSHGILVYEKLVKISAELFYWCPVFLTCSTWKWIFASMPDLKGCSKPYL