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CmaCh07G005140 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh07G005140
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpentatricopeptide repeat-containing protein At4g39620, chloroplastic
Genome locationCma_Chr07:2225841..2226489
RNA-Seq ExpressionCmaCh07G005140
SyntenyCmaCh07G005140
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594849.1 hypothetical protein SDJN03_11402, partial [Cucurbita argyrosperma subsp. sororia]5.3e-2586.49Show/hide
Query:  MAVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQYASRSSDGCRNNIGIQWMTGFILD
        MAVATRVVCIST PKRKSAAKTDR EAE+LVRGVIRKFS+KEP LKT D YASRSSDGCRNNIGIQ M GF+LD
Subjt:  MAVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQYASRSSDGCRNNIGIQWMTGFILD

KAG6604006.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1284Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRP RKSAAKTDR EAE+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

KAG7034169.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1284Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRP RKSAAKTDR EAE+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

XP_022978471.1 pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Cucurbita maxima]1.8e-1284Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRPKRKS AKTDR EAE+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

XP_023543919.1 pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Cucurbita pepo subsp. pepo]6.8e-1282Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRP RKS AKTDR EAE+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

TrEMBL top hitse value%identityAlignment
A0A0A0KGV8 Uncharacterized protein2.3e-1074Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRP RK   KTDR EAE+LVRG+IR FS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

A0A5A7T266 Pentatricopeptide repeat-containing protein3.1e-1072.92Show/hide
Query:  ATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        +TRVVC+STRP RKS  KTDR EAE+LVRG+I+KFS+KEP LKT D+Y
Subjt:  ATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

A0A6J1BVZ1 pentatricopeptide repeat-containing protein At4g39620, chloroplastic9.5e-1280Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AVAT+VVCISTRPK+KS AKTDR EAE+LVRGVIRKFS+KEP L T D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

A0A6J1GGN3 pentatricopeptide repeat-containing protein At4g39620, chloroplastic3.3e-1282Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRP RKSAAKTDR E E+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

A0A6J1IMR8 pentatricopeptide repeat-containing protein At4g39620, chloroplastic8.6e-1384Show/hide
Query:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY
        AV+TRVVCISTRPKRKS AKTDR EAE+LVRGVIRKFS+KEP LKT D+Y
Subjt:  AVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTTGCGACCCGAGTGGTCTGCATTTCGACTCGACCCAAGAGAAAATCTGCGGCTAAGACGGACAGGTTGGAGGCTGAAGATCTGGTTCGCGGTGTAATTAGAAA
GTTCAGCAACAAAGAACCATCGCTCAAGACATCGGACCAGTACGCCTCGAGGTCTTCAGATGGATGCAGAAACAACATTGGTATACAGTGGATGACGGGGTTTATTCTAG
ACTAA
mRNA sequenceShow/hide mRNA sequence
GAGGATGGCCGTTGCGACCCGAGTGGTCTGCATTTCGACTCGACCCAAGAGAAAATCTGCGGCTAAGACGGACAGGTTGGAGGCTGAAGATCTGGTTCGCGGTGTAATTA
GAAAGTTCAGCAACAAAGAACCATCGCTCAAGACATCGGACCAGTACGCCTCGAGGTCTTCAGATGGATGCAGAAACAACATTGGTATACAGTGGATGACGGGGTTTATT
CTAGACTAATATCTATGATGGGAAACAAAGGGCCAAAATCGAATGGTACATCGGTGGGAAACGAAACATTCTCTACAAGAGTGAAAACCTCCCTAGTAGACGCATTTTAA
AACCATGAAGCTGACAGCAATACGTAATAAGTTAAAACGAACAATATCTGCTGCCAATGTGTCTGGGCTGTTACAAGTGATATCAGAGCTAAACA
Protein sequenceShow/hide protein sequence
MAVATRVVCISTRPKRKSAAKTDRLEAEDLVRGVIRKFSNKEPSLKTSDQYASRSSDGCRNNIGIQWMTGFILD