; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh07G013390 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh07G013390
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein Ycf2
Genome locationCma_Chr07:7605858..7610081
RNA-Seq ExpressionCmaCh07G013390
SyntenyCmaCh07G013390
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006338 - chromatin remodeling (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0031011 - Ino80 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022925142.1 DNA helicase INO80-like isoform X1 [Cucurbita moschata]3.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

XP_022925143.1 DNA helicase INO80-like isoform X2 [Cucurbita moschata]3.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

XP_022925144.1 DNA helicase INO80-like isoform X3 [Cucurbita moschata]8.7e-3096.15Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

XP_022925146.1 DNA helicase INO80-like isoform X5 [Cucurbita moschata]3.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

XP_022966407.1 DNA helicase INO80-like [Cucurbita maxima]8.7e-3096.15Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

TrEMBL top hitse value%identityAlignment
A0A6J1EAZ7 Chromatin-remodeling ATPase INO801.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

A0A6J1EBE0 Chromatin-remodeling ATPase INO801.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

A0A6J1EEE8 Chromatin-remodeling ATPase INO801.9e-3093.83Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK  Y
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEY

A0A6J1EH30 Chromatin-remodeling ATPase INO804.2e-3096.15Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

A0A6J1HMW1 Chromatin-remodeling ATPase INO804.2e-3096.15Show/hide
Query:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
Subjt:  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

SwissProt top hitse value%identityAlignment
A0ZZ78 Protein Ycf21.6e-2348.98Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------
        MNRDPNAYRYKWSN SKNFQ   EHF+SEQKS   FQVVF RLRINQYSIDW                                                
Subjt:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------

Query:  -SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK
         SEIHIYELKGPNDQLCNQLLESI  +     ++   LLDD    QK
Subjt:  -SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK

A6MM80 Protein Ycf21.3e-2349.29Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE
        MNRDP+AYRYKWSN SKNFQEHF+SEQKS   FQVVF RLRINQYSIDW                                                 SE
Subjt:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE

Query:  IHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQ
        IHIYELKGPNDQLCNQLLESI  +     ++   LLD +Q
Subjt:  IHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQ

Q09MB4 Protein Ycf24.3e-2449.66Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQE---HFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------SEIHIY
        MNRDPNAYRYKWSN SKNFQE   HF+SEQKS   FQVVF RLRINQYSIDW                                          SEIHIY
Subjt:  MNRDPNAYRYKWSNRSKNFQE---HFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------SEIHIY

Query:  ELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQKLREIPIVGR
        ELKGPNDQLCNQLLESI  +     ++   LLDD    QK + +   GR
Subjt:  ELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQKLREIPIVGR

Q14F97 Protein Ycf24.3e-2449.31Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE
        MN DPN+YRYKWSN S NFQEHFISEQKS F FQVVF RLRINQYSIDW                                                 SE
Subjt:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE

Query:  IHIYELKGPNDQLCNQLLESIAPEEV-----VSLLLDDAQLEQK
        IHIYELKGPNDQLCNQLLE I  + V        LLDD    QK
Subjt:  IHIYELKGPNDQLCNQLLESIAPEEV-----VSLLLDDAQLEQK

Q2QD30 Protein Ycf22.9e-2852.08Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE
        MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDW                                                 SE
Subjt:  MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW-------------------------------------------------SE

Query:  IHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK
        IHIYELKGPND+LCNQLLESI  +     ++   LLDD    QK
Subjt:  IHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK

Arabidopsis top hitse value%identityAlignment
AT3G57300.1 INO80 ortholog1.8e-0951.32Show/hide
Query:  EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +VVSLL+DD   AQLEQK RE+P+ V   Q K+ K IR+DAEGDA+LE+L + + +    + P  +PEK  SS KK
Subjt:  EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

AT3G57300.2 INO80 ortholog1.8e-0951.32Show/hide
Query:  EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
        +VVSLL+DD   AQLEQK RE+P+ V   Q K+ K IR+DAEGDA+LE+L + + +    + P  +PEK  SS KK
Subjt:  EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core3.5e-2143.87Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------
        +NRDPNAYRYKWSN SKNFQ   EHF+SE+KS   FQVVF +L INQYSIDW                                                
Subjt:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------

Query:  ---------SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK
                 SEIHIYELKGPNDQLCNQLLESI  +     ++   LLDD    QK
Subjt:  ---------SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core3.5e-2143.87Show/hide
Query:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------
        +NRDPNAYRYKWSN SKNFQ   EHF+SE+KS   FQVVF +L INQYSIDW                                                
Subjt:  MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW------------------------------------------------

Query:  ---------SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK
                 SEIHIYELKGPNDQLCNQLLESI  +     ++   LLDD    QK
Subjt:  ---------SEIHIYELKGPNDQLCNQLLESIAPE-----EVVSLLLDDAQLEQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTT
CGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTC
CTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTT
GATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAA
GTGTGAATATAGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTT
CGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTC
CTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTT
GATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAA
GTGTGAATATAGTCATTGA
Protein sequenceShow/hide protein sequence
MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEIHIYELKGPNDQLCNQLLESIAPEEVVSLLLDDAQLEQKLREIPIVGRYQNKQAKGIRV
DAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEYSH