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CmaCh08G001000 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh08G001000
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein PRD1
Genome locationCma_Chr08:542942..544567
RNA-Seq ExpressionCmaCh08G001000
SyntenyCmaCh08G001000
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsIPR044968 - Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592895.1 Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5083.87Show/hide
Query:  QEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAG
        +E GT+CLLCFSNLISDP          +SSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTE DGDGSICD+FIAG
Subjt:  QEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAG

Query:  VLDRLPYAMLAWSPRQVYMEQNVR
        VLDRL YA+LAWSPRQVYM  NVR
Subjt:  VLDRLPYAMLAWSPRQVYMEQNVR

KAG7025297.1 Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5075.52Show/hide
Query:  FHGDLSSLCLH-------TQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKL
        FH   S    H        +E GT+CLLCFSNLISDP          +SSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKL
Subjt:  FHGDLSSLCLH-------TQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKL

Query:  CDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYMEQNVR
        CDVTE DGDGSICD+FIAGVLDRL YA+LAWSPRQVYM  NVR
Subjt:  CDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYMEQNVR

XP_022992066.1 protein PRD1 [Cucurbita maxima]5.2e-4162.5Show/hide
Query:  QEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVT
        Q E D+S+ P+SC H   SSLCLHTQEGG++CLLCFSNLISDPLS  +  S   S  S  L SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T
Subjt:  QEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVT

Query:  GLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
         LV +LCDV+E DGDGS+CD F+A V DRL    LAWS RQVYM
Subjt:  GLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

XP_023547735.1 protein PRD1 [Cucurbita pepo subsp. pepo]8.0e-4263.01Show/hide
Query:  SAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQ
        S Q E D+S+ P+SC HG  SSLCLHTQEGG++CLLCFSNLISDPLS  +  S   S  S  L SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q
Subjt:  SAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQ

Query:  VTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        +T LV +LCDV+E DGDGS+CD F+A V DRL    LAWS RQVYM
Subjt:  VTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

XP_038884337.1 LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida]6.7e-4164.67Show/hide
Query:  PDRESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDP
        P  E AQEE    + P+SC HG  SSLCLHTQEGGT+CLLCFSNLISDPLS  +  S   S  S  L SQ P L+TFLTFHSH IV  F+A L S+DDD 
Subjt:  PDRESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDP

Query:  IACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        IA QVT LV  LCD+TE DGDGS+CD FIA V DRL    LAWS RQVYM
Subjt:  IACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

TrEMBL top hitse value%identityAlignment
A0A6J1D8C7 protein PRD1 isoform X11.2e-4061.69Show/hide
Query:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY
        + PD E A+EE DQ+    PQSC HG  SSLCLHTQEGGT+CLLCFSNLISDPLS  +  S   S  S  L +Q P LRTFLTFHSHFIV  F+A L  +
Subjt:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY

Query:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        DD+PIA Q+T LV +LCD +  DGDGS+ + FIA V DRL    LAWS RQVYM
Subjt:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

A0A6J1DAL8 protein PRD1 isoform X31.2e-4061.69Show/hide
Query:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY
        + PD E A+EE DQ+    PQSC HG  SSLCLHTQEGGT+CLLCFSNLISDPLS  +  S   S  S  L +Q P LRTFLTFHSHFIV  F+A L  +
Subjt:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY

Query:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        DD+PIA Q+T LV +LCD +  DGDGS+ + FIA V DRL    LAWS RQVYM
Subjt:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

A0A6J1DBD4 protein PRD1 isoform X21.2e-4061.69Show/hide
Query:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY
        + PD E A+EE DQ+    PQSC HG  SSLCLHTQEGGT+CLLCFSNLISDPLS  +  S   S  S  L +Q P LRTFLTFHSHFIV  F+A L  +
Subjt:  KQPDRESAQEEQDQSVL--PQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSY

Query:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        DD+PIA Q+T LV +LCD +  DGDGS+ + FIA V DRL    LAWS RQVYM
Subjt:  DDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

A0A6J1ET85 protein PRD12.1e-4061.64Show/hide
Query:  SAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQ
        S Q E D+S+ P+SC H   SSLCLHTQEGG++CLLCFSNLISDPLS  +  S   S  S  L SQ P LRTFL+FHSHF+V  F+  L S+DD P+A Q
Subjt:  SAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQ

Query:  VTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        +T LV +LCDV+E DGDGS+CD F+A V DRL    LAWS RQVYM
Subjt:  VTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

A0A6J1JSI6 protein PRD12.5e-4162.5Show/hide
Query:  QEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVT
        Q E D+S+ P+SC H   SSLCLHTQEGG++CLLCFSNLISDPLS  +  S   S  S  L SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T
Subjt:  QEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVT

Query:  GLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
         LV +LCDV+E DGDGS+CD F+A V DRL    LAWS RQVYM
Subjt:  GLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

SwissProt top hitse value%identityAlignment
O23277 Protein PUTATIVE RECOMBINATION INITIATION DEFECT 12.9e-1838.1Show/hide
Query:  ESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIAC
        ES  +   QS+ P  C +G  S++ L   +GGT CL+CFSNL+SDP    +  S      S+ + S+   LRT L+ H HF+V   +  L S DD PIA 
Subjt:  ESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIAC

Query:  QVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        Q+  ++  LC V E+    SI + F+  + D+L    L WS RQ++M
Subjt:  QVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM

Arabidopsis top hitse value%identityAlignment
AT4G14180.1 putative recombination initiation defect 12.0e-1938.1Show/hide
Query:  ESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIAC
        ES  +   QS+ P  C +G  S++ L   +GGT CL+CFSNL+SDP    +  S      S+ + S+   LRT L+ H HF+V   +  L S DD PIA 
Subjt:  ESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFTSPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIAC

Query:  QVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM
        Q+  ++  LC V E+    SI + F+  + D+L    L WS RQ++M
Subjt:  QVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTTGGACATCTCGCCGGAGAAGAAGAGAACGCCATGTGAGTCCCCGTATTCCCTCGGATTCAGATGAAAAGTTCACCATTTCCGCGCCAAAATTTCGAAAAGC
CCCGCCATCTCTCGAAGAGATTACCCCAAGTGTTCTTCGGCGAGGGAAACAGCCAGACCGCGAATCAGCACAGGAAGAACAGGATCAATCCGTTCTTCCACAATCATGCT
TCCATGGCGACCTATCATCGCTTTGCCTTCACACACAGGAAGGAGGAACGGTTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCCTCTCTCTTCCACTGTTCACG
TCTCCTATTTACTCTTCCAGTTCTCTCGGCCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCT
CTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAACTGACGGTGATGGATCCATTTGCGATCATTTCATTG
CCGGAGTTTTGGATCGGCTTCCTTATGCCATGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGAACAAAATGTACGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTTGGACATCTCGCCGGAGAAGAAGAGAACGCCATGTGAGTCCCCGTATTCCCTCGGATTCAGATGAAAAGTTCACCATTTCCGCGCCAAAATTTCGAAAAGC
CCCGCCATCTCTCGAAGAGATTACCCCAAGTGTTCTTCGGCGAGGGAAACAGCCAGACCGCGAATCAGCACAGGAAGAACAGGATCAATCCGTTCTTCCACAATCATGCT
TCCATGGCGACCTATCATCGCTTTGCCTTCACACACAGGAAGGAGGAACGGTTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCCTCTCTCTTCCACTGTTCACG
TCTCCTATTTACTCTTCCAGTTCTCTCGGCCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCT
CTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAACTGACGGTGATGGATCCATTTGCGATCATTTCATTG
CCGGAGTTTTGGATCGGCTTCCTTATGCCATGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGAACAAAATGTACGATAAAGAATGATGGGGGTACTCAAACAGACAAAG
AAATCGAAAATGTGTTTGTGGTTGACGATCAAGGAGAACTTTGTGAGTATCTTATTCACTTGATTCAATCAGATGCACACAAGAATAATATCCAACGAAATAGAGTTGTT
TTTTTAGGGCTTTAGCAGAGAAAGATACCAACTAATCTTACCTGTACTACCCA
Protein sequenceShow/hide protein sequence
MDIWTSRRRRRERHVSPRIPSDSDEKFTISAPKFRKAPPSLEEITPSVLRRGKQPDRESAQEEQDQSVLPQSCFHGDLSSLCLHTQEGGTVCLLCFSNLISDPLSLPLFT
SPIYSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTETDGDGSICDHFIAGVLDRLPYAMLAWSPRQVYMEQNVR