CuGenDBv2

Gene ID	CmaCh08G001900
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L38
Genome location	Cma_Chr08:1070537..1072340
RNA-Seq Expression	CmaCh08G001900
Synteny	CmaCh08G001900
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022618 - ribonucleoprotein complex assembly (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7113321.1 hypothetical protein RHSIM_RhsimUnG0137800 [Rhododendron simsii]

3.7e-28

98.55

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

XP_010528118.1 PREDICTED: 60S ribosomal protein L38 [Tarenaya hassleriana]

6.3e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

XP_019056685.1 PREDICTED: 60S ribosomal protein L38 [Tarenaya hassleriana]

6.3e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

XP_022959586.1 60S ribosomal protein L38-like [Cucurbita moschata]

9.7e-29

100

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]

8.2e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB44 60S ribosomal protein L38

4.0e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

A0A5J5AU72 Uncharacterized protein

4.0e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

A0A6J1H598 60S ribosomal protein L38-like

4.7e-29

100

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

A0A6J1I9U6 60S ribosomal protein L38

4.0e-28

97.1

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

A0A6J1KTU8 60S ribosomal protein L38-like

4.7e-29

100

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

9.1e-30

92.75

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L38

1.1e-27

88.41

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L38

5.7e-24

78.26

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPGL+V++L
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L38

1.5e-24

79.71

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L38

2.0e-24

79.71

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPGL+V+DL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

6.5e-31

92.75

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family

6.5e-31

92.75

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Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Sequences

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CDS sequence

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mRNA sequence

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ATGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCG
ATGCTCCAAGTATCTTTATACTCTTTGTGTTTTCGACTCCGAGAAGGCAGAGAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTG
GGTTAGAGCCTGACAGCAAGAAGAGGACCAAAGTTTTTGTTTTAGTTGAAGTTTTTTTGTCCAAGTATTTAGGGAAATACATACATTTTAAAGTGGATTGAGTTTATTAT
GCAATTCCCAGTTGATGTTTCAGTAAAATTATGTACTCTTGATGTGATTCCCAGTTTTGGTTCCAGCAATCAACTTCTAAACTTTGCAAAATGAATGAAACATGAAAAAA
TCTGCCTTTTGTTA

Protein sequence

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MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

CmaCh08G001900 (gene) of Cucurbita maxima (Rimu) v1.1 genome