CuGenDBv2

Gene ID	CmaCh08G002020
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	RRM domain-containing protein
Genome location	Cma_Chr08:1138553..1140830
RNA-Seq Expression	CmaCh08G002020
Synteny	CmaCh08G002020
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-99

94.97

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-99

94.97

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

1.9e-98

93.97

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+I+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

5.3e-101

96.98

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

2.9e-99

94.97

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

1.4e-83

80.4

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRP+KPGRKISF WL  +DPDFEVA+++K L+++HVAEAAFL+K      EKLAKQQQ+ LKGNYKKYEI++ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

A0A1S3B3J3 uncharacterized protein LOC103485592

9.9e-85

80.9

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
         EMFDDRP+KPGRKISF WL  +DPDFEVA+++K LT++HVAEAAFLLK      EKLAKQQQ+ L+GNYKKYEI++ VM DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

A0A6J1DB90 uncharacterized protein LOC111018537

5.1e-81

78.89

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKD KEA SVISVI++FPFM+SGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPG KISF WL + DPDF+VAKKMK  T++H AE AFLLK      EKLAKQQQ+ LKGNYKK+EI+E VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

A0A6J1H6P8 uncharacterized protein LOC111460615

9.2e-99

93.97

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+I+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

A0A6J1KVQ1 uncharacterized protein LOC111498019

2.6e-101

96.98

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK      EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.0e-45

46.63

Show/hide

Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS +SQ PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK----EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+   DPDF+ A+++K L ++H AE +F+LK    EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK----EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

3.4e-45

46.15

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS +SQ PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+   DPDF+ A+++K L ++H AE +F+LK      EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLK------EKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMR

Sequences

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CDS sequence

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ATGGGATCAGCTACTGATGAACAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGC
TTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAA
ATTCTGTCATCTCTGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCATACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAG
CCTGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGAAGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTTGCTGAAGCTGCATTCTT
GCTGAAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGGAAACTACAAGAAATATGAGATCCTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAA
GGCGTTATAATATGCGAGTTGCAGATGATTAA

mRNA sequence

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GATCGTTTCAGTTCTCTTCTGCGTACTTTTATTCCATTTCTCCTCCCTGACAGCCATTGGAGGAGACCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCC
ACGCTCCGCTCCTCCATTTTTTGTTCTACTGCTACAGGCTCATGCCCCTCGCTCACCGTTGCTCATTTCATTTCTCTTCTTCGGACTAGTTCTTTATCATCCCAGATGGG
ATCAGCTACTGATGAACAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAG
ATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCT
GTCATCTCTGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCATACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCTGG
TAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGAAGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTTGCTGAAGCTGCATTCTTGCTGA
AGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGGAAACTACAAGAAATATGAGATCCTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGT
TATAATATGCGAGTTGCAGATGATTAA

Protein sequence

Show/hide protein sequence

MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIK
PGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLKEKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD

CmaCh08G002020 (gene) of Cucurbita maxima (Rimu) v1.1 genome